# BioNetGen References

See the following for detailed BioNetGen modeling information:

> Blinov, M., Yang, J., Faeder, J., Hlavacek, W., Graph Theory for Rule-Based Modeling of Biochemical Networks, Proceedings of BioCONCUR 2005, San Francisco, California, 2005.

> Faeder, J., Blinov, M., Hlavacek, W., Graphical Rule-Based Representation of Signal-Transduction Networks, Proceedings of the 2005 ACM symposium on Applied Computing, Santa Fe, New Mexico, 2005, ACM Press, p 133-140.

> Faeder, J., Blinov, M., Goldstein, B., Hlavacek, W., Rule-based modeling of biochemical networks, Complexity, Volume 10, Issue 4, 2005, Wiley Periodicals, Inc., p 22-41.

> Blinov, M., Faeder, J., Goldstein, B., Hlavacek, W., BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains, Bioinformatics Applications Note, Volume 20, Number 17, 2004, Oxford University Press, p 3289-3291.

> Hlavacek, W., Faeder, J., Blinov, M., Perelson, A., Goldstein, B., The complexity of complexes in signal transduction, Biotechnology and Bioengineering, Volume 84, Issue 7, 2003, Wiley Periodicals, Inc., p 783-794.