Virtual Cell at UConn


BioNetGen stand-alone

Modeling with BioNetGen


  1. Start from The latest BioNetGen tutorial - book chapter
  2. Check examples at STEP-BY-STEP TUTORIAL at ICSB October 1st, 2007
  3. EXAMPLES FOR THE TUTORIAL at ICSB October 1st, 2007
You may also check other resources:

  1. Biological Motivation for Rule-based modeling (pdf)
  2. Science STKE review of rule-based modeling(pdf)
  3. BioNetGen - powerpoint tutorial (pdf)
  4. BioNetGen - powerpoint Tutorial on EGFR (pdf)
  5. BioNetGen@VCell UserGuide
  6. Detailed BioNetGen modeling tutorial (html)
  7. Tutorial at q-bio Santa Fe, 08/08/2007