SpringSaLaD version 2 released

December 7th, 2017|News, NRCAM publication, Uncategorized|

11-30-2017. Version 2 of the SpringSaLaD software was released today. The primary new feature is the ability to directly build models from atomic coordinates in pdb files, using an interactive 3D viewer to compare the course-grained linked spheres representation in SpringSaLaD with the PDB structure.

biomodel-116929971

August 30th, 2017|Uncategorized|

Name: “Dreyer_2017_AIMS Biophysics”
Saved: Tue, 31 May 2016  13:42:11 GMT
vcell identifier: biomodel-116929912
Owned by: “idreyer”

download model (.vcml)

biomodel-116929912

August 30th, 2017|Uncategorized|

Name: “Dreyer_2017_AIMS Biophysics”
Saved: Tue, 31 May 2016  13:42:11 GMT
vcell identifier: biomodel-116929912
Owned by: “idreyer”

download model (.vcml)

biomodel-116930032

August 30th, 2017|Uncategorized|

Name: “Wittek_et_al_JIntegrPlantBiol_2017_Phloem Fungus”
Saved: Tue, 31 May 2016  13:42:11 GMT
vcell identifier: biomodel-116930032
Owned by: “idreyer”

download model (.vcml)

New published model of the PLC/PKC pathway

July 10th, 2017|News, NRCAM publication, Uncategorized, VCell Posts|

2017-07-10. A new publication in Biophysical Journal by Mohan et al. uses a VCell model to define mechanisms for signal amplification in the PLC/PKC pathway during chemotaxis.  Link to the publication and view model details from our Published Models listing.

Summer Research Projects

July 1st, 2017|CCAM Events, News, Uncategorized, VCell Posts|

7-1-2017.  CCAM welcomes several undergraduates and a graduate rotation student who are working on projects related to VCell this summer . Undergraduate students include Keeyan Ghoreshi, Anvin Thomas, Natalie de la Garrique and Shahan Kamal from UConn Storrs and Kevin Gaffney from the University of Oklahoma. Joe Masison is a new MD/PhD student from University of Maryland. Keeyan is working on the infrastructure for Sloppy Modeling projects, Shahan is modeling pathways using high-throuput data, Natalie […]