#Treating EGF-EGFR as an extra species when in catalyst role

#Stoichiometries

ex:oneMolecule   rdf:type   sbpax:Stoichiometry 
ex:oneMolecule   sbpax:hasUnit   sbpax:particleNumber 
ex:oneMolecule   sbpax:hasNumber   1.0

ex:tenMolecules   rdf:type   sbpax:Stoichiometry 
ex:tenMolecules   sbpax:hasUnit   sbpax:particleNumber 
ex:tenMolecules   sbpax:hasNumber   10.0

#Locations

ex:plasmaMembrane   rdf:type   sbpax:Location 
ex:plasmaMembrane   sbpax:hasDimensions   2 
ex:cytosol   rdf:type   sbpax:Location 
ex:cytosol   sbpax:hasDimensions   3 
ex:cytosol   sbpax:surroundedBy   ex:plasmaMembrane

#Substances

ex:ADP   rdf:type   bp:smallMolecule
ex:ATP   rdf:type   bp:smallMolecule
ex:EGF-EGFR-generic   rdf:type   bp:complex 
ex:EGF-EGFR   rdf:type   bp:complex 
ex:EGF-phosphoEGFR   rdf:type   bp:complex

ex:EGF-EGFR   sbpax:subSetOf   ex:EGF-EGFR-generic 
ex:EGF-phosphoEGFR   sbpax:subSetOf   ex:EGF-EGFR-generic

#Species

ex:ADPInCytosol   rdf:type   sbpax:Species 
ex:ADPInCytosol   sbpax:consistsOf   sbpax:ADP 
ex:ADPInCytosol   sbpax:locatedAt   sbpax:Cytosol

ex:ATPInCytosol   rdf:type   sbpax:Species 
ex:ATPInCytosol   sbpax:consistsOf   sbpax:ATP 
ex:ATPInCytosol   sbpax:locatedAt   sbpax:Cytosol

ex:EGF-EGFRInMembrane   rdf:type   sbpax:Species
ex:EGF-EGFRInMembrane   sbpax:consistsOf   ex:EGF-EGFR
ex:EGF-EGFRInMembrane   sbpax:locatedAt   sbpax:plasmaMembrane

ex:EGF-EGFRInMembraneAsCatalyst   rdf:type   sbpax:Species
ex:EGF-EGFRInMembraneAsCatalyst   sbpax:consistsOf   ex:EGF-EGFR
ex:EGF-EGFRInMembraneAsCatalyst   sbpax:locatedAt   sbpax:plasmaMembrane

ex:EGF-phosphoEGFRInMembrane   rdf:type   sbpax:Species 
ex:EGF-phosphoEGFRInMembrane   sbpax:consistsOf   ex:EGF-phosphoEGFR 
ex:EGF-phosphoEGFRInMembrane   sbpax:locatedAt   sbpax:plasmaMembrane

#The Process

ex:autophosphorylationOfEGFR3   rdf:type   bp:biochemicalReaction

ex:autophosphorylationOfEGFR3   sbpax:hasParticipantLeft   ex:PPLATP3
ex:PPLATP3   rdf:type   sbpax:ProcessParticipantLeft
ex:PPLATP3   sbpax:hasStoichiometry   ex:tenMolecules
ex:PPLATP3   sbpax:involves   ex:ATPInCytosol

ex:autophosphorylationOfEGFR3   sbpax:hasParticipantLeft   ex:PPLEE3
ex:PPLEE3   rdf:type   sbpax:ProcessParticipantLeft
ex:PPLEE3   sbpax:hasStoichiometry   ex:oneMolecule
ex:PPLEE3   sbpax:involves   ex:EGF-EGFRInMembrane

ex:autophosphorylationOfEGFR3   sbpax:hasParticipantRight   ex:PPRADP3
ex:PPRADP3   rdf:type   sbpax:ProcessParticipantLeft
ex:PPRADP3   sbpax:hasStoichiometry   ex:tenMolecules
ex:PPRADP3   sbpax:involves   ex:ADPInCytosol

ex:autophosphorylationOfEGFR3   sbpax:hasParticipantRight   ex:PPREPE3
ex:PPREPE3   rdf:type   sbpax:ProcessParticipantLeft
ex:PPREPE3   sbpax:hasStoichiometry   ex:oneMolecule
ex:PPREPE3   sbpax:involves   ex:EGF-phosphoEGFRInMembrane

ex:autophosphorylationOfEGFR3   sbpax:hasParticipantCatalyst   ex:PPCEE3
ex:PPCEE3   rdf:type   sbpax:ProcessParticipantCatalyst
ex:PPCEE3   sbpax:hasStoichiometry   ex:oneMolecule
ex:PPCEE3   sbpax:involves   ex:EGF-EGFRInMembraneAsCatalyst

#The Model

ex:model3   rdf:type   sbpax:SystemModel
ex:model3   sbpax:hasProcessModel   ex:modelOfAutophosphorylation3
ex:modelOfAutophosphorylation3   rdf:type   sbpax:ProcessModel
ex:modelOfAutophosphorylation3   sbpax:modelsProcess
ex:autophosphorylationOfEGFR3
ex:model3   sbpax:modelsSpecies   ex:ATPInCytosol
ex:model3   sbpax:modelsSpecies   ex:ADPInCytosol
ex:model3   sbpax:modelsSpecies   ex:EGF-EGFRInMembrane
ex:model3   sbpax:modelsSpecies   ex:EGF-phosphoEGFRInMembrane
ex:model3   sbpax:modelsSpecies   ex:EGF-phosphoEGFRInMembraneAsCatalyst
ex:model3   sbpax:modelsSubstance   ex:ATP
ex:model3   sbpax:modelsSubstance   ex:ADP
ex:model3   sbpax:modelsSubstance   ex:EGF-EGFR
ex:model3   sbpax:modelsSubstance   ex:EGF-phosphoEGFR