Volynski et al., 2015

Calmodulin as a major calcium buffer shaping vesicular release and short-term synaptic plasticity: facilitation through buffer dislocation
Timofeeva, Y., Volynski, K. E.
Front Cell Neurosci. 2015;9:239.
PUBMED:26190970      doi:10.3389/fncel.2015.00239

Ibrahim, B., 2015

In silico spatial simulations reveal that MCC formation and excess BubR1 are required for tight inhibition of the anaphase-promoting complex
Ibrahim, B.
Mol Biosyst. 2015;11(11):2867-77.
PUBMED:26256776      doi:10.1039/c5mb00395d

McCulloch et al., 2015

Bridging scales through multiscale modeling: a case study on protein kinase A
Boras, B. W., Hirakis, S. P., Votapka, L. W., Malmstrom, R. D., Amaro, R. E., McCulloch, A. D.
Front Physiol. 2015;6:250.
PUBMED:26441670      doi:10.3389/fphys.2015.00250

Dodge-Kafka et al., 2015

Phosphorylation state-dependent interaction between AKAP7delta/gamma and phospholamban increases phospholamban phosphorylation
Rigatti, M., Le, A. V., Gerber, C., Moraru,, II, Dodge-Kafka, K. L.
Cellular Signaling, June 3rd 2015
PUBMED:26027516      doi:10.1016/j.cellsig.2015.05.016

VCell BioModels referenced in publication:
user: Marc.Rigatti,   model name: AKAP7_PLB_Binding_2PKA

Dekker et al., 2015

Symmetry and scale orient Min protein patterns in shaped bacterial sculptures
Wu, F., van Schie, B. G., Keymer, J. E., Dekker, C.
Nat Nanotechnol. 2015;10(8):719-26.
PUBMED:26098227      doi:10.1038/nnano.2015.126

Panteleev et al., 2015

Platelet surface-associated activation and secretion-mediated inhibition of coagulation factor XII
Zakharova, N. V., Artemenko, E. O., Podoplelova, N. A., Sveshnikova, A. N., Demina, I. A., Ataullakhanov, F. I., Panteleev, M. A.
Journal: PLoS ONE 10(2): e0116665. doi:10.1371/journal.pone.0116665 Publication Date: February 17, 2015
PUBMED:25688860      doi:10.1371/journal.pone.0116665

VCell BioModels referenced in publication:
user: agolomy,   model name: fXii_activation

Dittman et al., 2015

Synaptic activity regulates the abundance and binding of complexin
Wragg, R. T., Gouzer, G., Bai, J., Arianna, G., Ryan, T. A., Dittman, J. S.
Biophysical Journal, Volume 108, Issue 6, p1318-1329, 24 March 2015
PUBMED:25809246      doi:10.1016/j.bpj.2014.12.057

VCell BioModels referenced in publication:
user: jdittman,   model name: CPX Binding

Girault et al., 2015

Dendritic geometry shapes neuronal cAMP signalling to the nucleus
Li, L., Gervasi, N., Girault, J. A.
Nat Commun, 2015/02/18
PUBMED:25692798      doi:10.1038/ncomms7319

VCell BioModels referenced in publication:
user: luli,   model name: Li2015_geometryCreatesNonlinearNuclearPKA

Haiech et al., 2015

Integration of SBML models for the description of biological system in a lab-on-chip
Rezgui, A., Madec, M., Lallement, C., Haiech, J.
Mixed Design of Integrated Circuits & Systems (MIXDES), 2015 22nd International Conference, Torun, 2015, pp. 165-170.
doi:10.1109/MIXDES.2015.7208504

Oksanen et al., 2015

Non-structural proteins P17 and P33 are involved in the assembly of the internal membrane-containing virus PRD1
Karttunen, J., Mantynen, S., Ihalainen, T. O., Bamford, J. K., Oksanen, H. M.
Virology. 2015;482:225-33.
PUBMED:25880114      doi:10.1016/j.virol.2015.03.049

Iyengar et al., 2014

Interconnected network motifs control podocyte morphology and kidney function
Azeloglu, E. U., Hardy, S. V., Eungdamrong, N. J., Chen, Y., Jayaraman, G., Chuang, P. Y., Fang, W., Xiong, H., Neves, S. R., Jain, M. R., Li, H., Ma&apos, ayan, A., Gordon, R. E., He, J. C., Iyengar, R.
Sci. Signal., 4 February 2014 Vol. 7, Issue 311, p. ra12 [DOI: 10.1126/scisignal.2004621]
PUBMED:24497609      doi:10.1126/scisignal.2004621

VCell BioModels referenced in publication:
user: sihar,   model name: Podocyte Nested FFM model (copy sensitivity)
user: sihar,   model name: Podocyte Nested FFM model

McCulloch et al., 2014

Using Markov state models to develop a mechanistic understanding of protein kinase A regulatory subunit RIalpha activation in response to cAMP binding
Boras, B. W., Kornev, A., Taylor, S. S., McCulloch, A. D.
J Biol Chem. 2014 Sep 8. pii: jbc.M114.568907
PUBMED:25202018      doi:10.1074/jbc.M114.568907

VCell BioModels referenced in publication:
user: bboras,   model name: Boras_PKA-Dimer
user: bboras,   model name: Boras_PKA-CBD-A
user: bboras,   model name: Boras_PKA-Unconstrained
user: bboras,   model name: Boras_PKA_Dimer_mutant_B-inhibited
user: bboras,   model name: Boras_PKA_CBD-A_mutant_B-inhibited
user: bboras,   model name: Boras_PKA-CBD-A
user: bboras,   model name: Boras_PKA_Dual_mutant_B-inhibited
user: bboras,   model name: Boras_PKA-CBD-B
user: bboras,   model name: Boras_PKA-Dual
user: bboras,   model name: Boras_PKA-Dimer_mutant_A-inhibited
user: bboras,   model name: Boras_PKA_CBD-A_mutant_A-inhibited
user: bboras,   model name: Boras_PKA_CBD-B_mutant_A-inhibited
user: bboras,   model name: Boras_PKA_Dual_mutant_A-inhibited

Robinson et al., 2014

Structural basis of thymosin-beta4/profilin exchange leading to actin filament polymerization
Xue, B., Leyrat, C., Grimes, J. M., Robinson, R. C.
Proc Natl Acad Sci USA. 2014;111(43):E4596-605.
PUBMED:25313062      doi:10.1073/pnas.1412271111

Lagnado et al., 2014

A synaptic mechanism for temporal filtering of visual signals
Baden, T., Nikolaev, A., Esposti, F., Dreosti, E., Odermatt, B., Lagnado, L.
PLoS Biol. 2014;12(10):e1001972.
PUBMED:25333637      doi:10.1371/journal.pbio.1001972

Henze et al., 2014

Active transport can greatly enhance Cdc20:Mad2 formation
Ibrahim, B., Henze, R.
Int J Mol Sci. 2014;15(10):19074-91.
PUBMED:25338047      doi:10.3390/ijms151019074

Falkenburger et al., 2014

Dynamic metabolic control of an ion channel
Hille, B., Dickson, E., Kruse, M., Falkenburger, B.
Prog Mol Biol Transl Sci. 2014;123:219-47.
PUBMED:24560147      doi:10.1016/b978-0-12-397897-4.00008-5

Saucerman et al., 2014

Integrating fluorescent biosensor data using computational models
Greenwald, E. C., Polanowska-Grabowska, R. K., Saucerman, J. J.
Methods Mol Biol. 2014;1071:227-48.
PUBMED:24052393      doi:10.1007/978-1-62703-622-1_18

Lnenicka et al., 2014

Synaptic excitation is regulated by the postsynaptic dSK channel at the Drosophila larval NMJ
Gertner, D. M., Desai, S., Lnenicka, G. A.
Journal of NeurophysiologyPublished 15 June 2014Vol. 111no. 2533-2543 DOI: 10.1152/jn.00903.2013
PUBMED:24671529      doi:10.1152/jn.00903.2013

VCell BioModels referenced in publication:
user: gregl,   model name: epsp_gcs

Hille et al., 2013

Quantitative properties and receptor reserve of the IP(3) and calcium branch of G(q)-coupled receptor signaling
Dickson, E. J., Falkenburger, B. H., Hille, B.
J. Gen. Physiol. 2013; 141:521-535.
PUBMED:23630337      doi:10.1085/jgp.201210886

VCell BioModels referenced in publication:
user: bfalken,   model name: FalkenburgerDicksonHille2013

Philipson et al., 2013

Ion channels and regulation of insulin secretion in human beta-cells: a computational systems analysis
Fridlyand, L. E., Jacobson, D. A., Philipson, L. H.
Islets. 2013;5(1):1-15.
PUBMED:23624892      doi:10.4161/isl.24166