Pathway Commons Database

The Pathway Commons panel allows to query and download biological pathways from Pathway Commons in BioPAX Level 2. Pathway Commons aggregates and integrates the content of nine major pathway databases (BioGRID, MSKCC Cancer Cell Map, Human Protein Database, HumanCyc, SBCNY IMID, IntAct, MINT, NCI/Nature PID, Reactome). As of October 2011, Pathway Commons contains 1,668 pathways, 442,182 interactions, 86,282 physical entities and 414 organisms. Downloaded pathways can be used to build and annotate models based on the pathways and their links to terminologies and databases about proteins, small molecules, genes, anatomical features, organisms and publications.