List of examples

  1. The simplest BNGL model: a single reaction
  2. BNGL use to track composition and binding of species
  3. Introducing rules that generate multiple reactions and new species
  4. Introducing multi-state molecules
  5. Introducing dimers
  6. Fluorescent labeling of molecules-1
  7. Fluorescent labeling of molecules-2
  8. Fluorescent labeling of molecules-3
  9. Introducing potentially infinite chains
  10. Compartments and integration with VCell.