OUTDATED! UNDER RECONSTRUCTION!!!
The new SyBiL Build 119 (Shortbread) is available It features further improvement of the user interface and fix of several minor bugs. To start, click here.
The new SyBiL Build 118 (Ginger Snaps) is available with improved user interface. Also minor bugs have been fixed. This makes it more convenient and easier to query Pathway Commons and UniProt, and to convert pathways into models. To start, click here.
The latest presentation.
Flyer about SyBiL
SyBiL is short for Systems Biology Linker. Biological pathways, reaction and signaling networks are made publicly availabel in formats standardized to the Biological Pathway eXchange format (BioPAX). Simulation tools for biological pathways are standardized to other Markup languages such as Systems Biology Markup Language (SBML) and Virtual Cell Markup Language (VCML). To take full advantage of scientific advances requires the mapping and integration of simulation markup languages with BioPAX. Sybil is developed to convert models between BioPAX and SBML/VCML.
Sybil is designed for
See detailed manual.
Read more about the proposed way to link Pathway data in BioPAX standard with simulation tools
supporting SBML at VCell wiki.
BioPAX/Sybil tutorial given at the 2nd q-bio conference,
August 6th, 2008, Santa Fe, NM.
BioPAX/Sybil tutorial given at the 2nd q-bio conference, August 6th, 2008, Santa Fe, NM.