Network Specifications

The Network Tab enables the user to specify constraints for generating a reactin network from the rules in a rule-based model. Network-generation is performed by the BioNetGen engine. The network that is generated can then be used in deterministic and stoichastic applications. In addition, the user can test the size of the reaction network that would be obtained using the constraints supplied, prior to actually generating the network. The network tab is active only if at least one Molecule is specified.

Clicking the "Edit/Test Constraints" button presents a window to specify new constraints.

Warnings may be generated when specifying or applying the constraints: