Name: “Brown et al 2008 Purkinje Compartmental – adapted from Hernjak et al”
Saved: Sat, 09 Feb 2008  23:39:30 GMT
vcell identifier: biomodel-26581203
Owned by: “Brown”

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Compartments, Species, Reactions
  • Compartment "Cytosol".   (type: Volume)
    • Species "PA_D_Cytosol"
    • Species "PABCa_D_Cytosol"
    • Species "PABMg_D_Cytosol"
    • Species "CG_D_Cytosol"
    • Species "D28kB_D_Cytosol"
    • Species "PA_Cytosol"
    • Species "CG_Cytosol"
    • Species "PABCa_Cytosol"
    • Species "Mg_Cytosol"
    • Species "D28k_high_Cytosol"
    • Species "D28k_high_D_Cytosol"
    • Species "D28kB_high_D_Cytosol"
    • Species "CGB_D_Cytosol"
    • Species "Ca_D_Cytosol"
    • Species "CGB_Cytosol"
    • Species "D28k_Cytosol"
    • Species "D28kB_high_Cytosol"
    • Species "PABMg_Cytosol"
    • Species "IP3_Cytosol"
    • Species "D28k_D_Cytosol"
    • Species "IP3_D_Cytosol"
    • Species "Mg_D_Cytosol"
    • Species "Ca_Cytosol"
    • Species "D28kB_Cytosol"
    • Species "r_spine"
    • Species "r_neck"
    • Species "l_neck"
    • Reaction "IP3deg"   (IP3_D_Cytosol → ∅)
    • Reaction "D28kB_deg"   (D28kB_D_Cytosol → ∅)
    • Reaction "D28k_deg"   (D28k_D_Cytosol → ∅)
    • Reaction "PA_MgD"   (Mg_D_Cytosol + PA_D_Cytosol → PABMg_D_Cytosol)
    • Reaction "PA_Ca"   (PA_Cytosol + Ca_Cytosol → PABCa_Cytosol)
    • Reaction "PABMg_deg"   (PABMg_D_Cytosol → ∅)
    • Reaction "D28kB_d"   (D28kB_Cytosol → ∅)
    • Reaction "D28k_high_deg"   (D28k_high_D_Cytosol → ∅)
    • Reaction "Ca_d"   (Ca_Cytosol → ∅)
    • Reaction "CG_d"   (CG_Cytosol → ∅)
    • Reaction "CGbinding"   (Ca_Cytosol + CG_Cytosol → CGB_Cytosol)
    • Reaction "D28kB_high_deg"   (D28kB_high_D_Cytosol → ∅)
    • Reaction "CG_Dbinding"   (Ca_D_Cytosol + CG_D_Cytosol → CGB_D_Cytosol)
    • Reaction "CaD28k_med"   (D28k_Cytosol + Ca_Cytosol → D28kB_Cytosol)
    • Reaction "PABCa_deg"   (PABCa_D_Cytosol → ∅)
    • Reaction "IP3_d"   (IP3_Cytosol → ∅)
    • Reaction "D28k_high_d"   (D28k_high_Cytosol → ∅)
    • Reaction "PABMg_d"   (PABMg_Cytosol → ∅)
    • Reaction "CD28k_high"   (Ca_Cytosol + D28k_high_Cytosol → D28kB_high_Cytosol)
    • Reaction "D28kBDbinding"   (D28k_D_Cytosol + Ca_D_Cytosol → D28kB_D_Cytosol)
    • Reaction "IP3_degr"   (IP3_Cytosol → ∅)
    • Reaction "D28kB_high_d"   (D28kB_high_Cytosol → ∅)
    • Reaction "D28k_d"   (D28k_Cytosol → ∅)
    • Reaction "CGB_d"   (CGB_Cytosol → ∅)
    • Reaction "CG_deg"   (CG_D_Cytosol → ∅)
    • Reaction "IP3_degr1"   (IP3_D_Cytosol → ∅)
    • Reaction "Ca_deg"   (Ca_D_Cytosol → ∅)
    • Reaction "PA_deg"   (PA_D_Cytosol → ∅)
    • Reaction "PA_d"   (PA_Cytosol → ∅)
    • Reaction "CGB_deg"   (CGB_D_Cytosol → ∅)
    • Reaction "PA_Mg"   (PA_Cytosol + Mg_Cytosol → PABMg_Cytosol)
    • Reaction "CD28k_highDbinding"   (Ca_D_Cytosol + D28k_high_D_Cytosol → D28kB_high_D_Cytosol)
    • Reaction "PABCa_d"   (PABCa_Cytosol → ∅)
    • Reaction "PA_Dbinding"   (PA_D_Cytosol + Ca_D_Cytosol → PABCa_D_Cytosol)
    • Reaction "pulses"   (∅ → IP3_Cytosol)
  • Compartment "ER".   (type: Volume)
    • Species "Ca_D_ER"
    • Species "Ca_ER"
  • Compartment "Extracellular".   (type: Volume)
    • Species "Ca_Extracellular"
    • Species "Ca_D_Extracellular"
  • Compartment "PM".   (type: Membrane)
    • Reaction "flux0"   (Ca_Extracellular → Ca_Cytosol)
    • Reaction "flux1"   (Ca_D_Extracellular → Ca_D_Cytosol)
  • Compartment "ERM".   (type: Membrane)
    • Species "h_D_ERM"
    • Species "ERDensity_D_ERM"
    • Species "ERDensity_ERM"
    • Species "h_ERM"
    • Reaction "reaction1"   (h_D_ERM → ∅)
    • Reaction "reaction0"   (h_ERM → ∅)
    • Reaction "ER_leak_flux"   (Ca_Cytosol → Ca_ER)
    • Reaction "SERCA_fluxD"   (Ca_D_Cytosol → Ca_D_ER)
    • Reaction "IP3R_fluxD"   (Ca_D_Cytosol → Ca_D_ER)
    • Reaction "SERCA_flux"   (Ca_Cytosol → Ca_ER)
    • Reaction "IP3R_flux"   (Ca_Cytosol → Ca_ER)
    • Reaction "ER_leak_fluxD"   (Ca_D_Cytosol → Ca_D_ER)
2018-07-12T19:23:16+00:00 February 16th, 2018|biomodel|