Name: “CALI”
Saved: Sun, 24 Jan 2010  3:16:43 GMT
vcell identifier: biomodel-38086434
Owned by: “marynka”

download model (.vcml)

Compartments, Species, Reactions
  • Compartment "Cyt".   (type: Volume)
    • Species "PointedT_Cyt"
    • Species "GATBThy_Cyt"
    • Species "BarbedDPi_Cyt"
    • Species "PointedD_Cyt"
    • Species "Prof_Cyt"
    • Species "CBarbedDPi_Cyt"
    • Species "CofFADcounter_Cyt"
    • Species "Arp23_Cyt"
    • Species "Cof_Cyt"
    • Species "PointedTArpFAT_Cyt"
    • Species "PointedTArpFADPi_Cyt"
    • Species "PointedTArpFAD_Cyt"
    • Species "PointedDPi_Cyt"
    • Species "GAT_Cyt"
    • Species "GAD_Cyt"
    • Species "GADPiBThy_Cyt"
    • Species "PointedDArpFAD_Cyt"
    • Species "CofFADPi_Cyt"
    • Species "PointedDPiArpFAD_Cyt"
    • Species "CofFAD1_Cyt"
    • Species "CBarbedT_Cyt"
    • Species "GADPiProf_Cyt"
    • Species "CBarbedD_Cyt"
    • Species "BarbedT_Cyt"
    • Species "GATProf_Cyt"
    • Species "BarbedD_Cyt"
    • Species "GADPi_Cyt"
    • Species "CofFAD2_Cyt"
    • Species "FAD_Cyt"
    • Species "FAT_Cyt"
    • Species "FADPi_Cyt"
    • Species "GADBThy_Cyt"
    • Species "BThy_Cyt"
    • Species "Cap_Cyt"
    • Species "GADProf_Cyt"
    • Species "GA_Cyt"
    • Species "GAProf_Cyt"
    • Species "ProfBT_Cyt"
    • Species "ProfBDPi_Cyt"
    • Species "ProfBD_Cyt"
    • Species "PointedDPiArpFAT_Cyt"
    • Species "PointedDPiArpFADPi_Cyt"
    • Species "PointedDArpFAT_Cyt"
    • Species "PointedDArpFADPi_Cyt"
    • Species "VASP_Cyt"
    • Species "CBarbedT_dark_Cyt"
    • Species "CBarbedDPi_dark_Cyt"
    • Species "CBarbedD_dark_Cyt"
    • Species "laser_Cyt"
    • Species "Cap_dark_Cyt"
    • Species "Cap_Cap_Cyt"
    • Species "VASP_BarbedD_Cyt"
    • Species "VASP_BarbedDPi_Cyt"
    • Species "VASP_BarbedT_Cyt"
    • Reaction "GATProf to BarbedT"   (GATProf_Cyt + BarbedT_Cyt → FAT_Cyt + ProfBT_Cyt)
    • Reaction "BarbedD to GAD"   (BarbedD_Cyt → GAD_Cyt)
    • Reaction "Cof FAD to CofFADcounter"   (FAD_Cyt + Cof_Cyt → CofFADcounter_Cyt)
    • Reaction "GA_Prof"   (Prof_Cyt + GA_Cyt → GAProf_Cyt)
    • Reaction "PointredD to GAD"   (PointedD_Cyt → GAD_Cyt)
    • Reaction "GATProf to BarbedDPi"   (GATProf_Cyt + BarbedDPi_Cyt → FADPi_Cyt + ProfBT_Cyt)
    • Reaction "BarbedD PointedD to 2FAD"   (PointedD_Cyt + BarbedD_Cyt → 2 FAD_Cyt)
    • Reaction "GADPi to PointedDPi"   (GADPi_Cyt → FADPi_Cyt)
    • Reaction "CofFAD1 to CofFAD2"   (CofFAD1_Cyt + FAD_Cyt + Cof_Cyt → CofFAD2_Cyt)
    • Reaction "BarbedT PointedT to 2FAT"   (PointedT_Cyt + BarbedT_Cyt → 2 FAT_Cyt)
    • Reaction "FADPi to CofFADPi"   (FADPi_Cyt + Cof_Cyt → CofFADPi_Cyt)
    • Reaction "GADProf to BarbedDPi"   (BarbedDPi_Cyt + GADProf_Cyt → FADPi_Cyt + ProfBD_Cyt)
    • Reaction "BarbedD PointedT to FAD FAT"   (PointedT_Cyt + BarbedD_Cyt → FAT_Cyt + FAD_Cyt)
    • Reaction "GAD to PointedT"   (GAD_Cyt + PointedT_Cyt → PointedD_Cyt + FAT_Cyt)
    • Reaction "PointedDPiArp dissociate FAT"   (PointedDPiArpFAT_Cyt → Arp23_Cyt + PointedDPi_Cyt + FAT_Cyt)
    • Reaction "PointedDArp dissociate FAD"   (PointedDArpFAD_Cyt → Arp23_Cyt + PointedD_Cyt + FAD_Cyt)
    • Reaction "PointedDArp dissociate FADPi"   (PointedDArpFADPi_Cyt → Arp23_Cyt + PointedD_Cyt + FADPi_Cyt)
    • Reaction "PointedDPiArp dissociate FADPi"   (PointedDPiArpFADPi_Cyt → Arp23_Cyt + PointedDPi_Cyt + FADPi_Cyt)
    • Reaction "PointedDArp dissociate FAT"   (PointedDArpFAT_Cyt → Arp23_Cyt + PointedD_Cyt + FAT_Cyt)
    • Reaction "GAT to GADPi"   (GAT_Cyt → GADPi_Cyt)
    • Reaction "GADPiProf to BarbedT"   (GADPiProf_Cyt + BarbedT_Cyt → FAT_Cyt + ProfBDPi_Cyt)
    • Reaction "GAT to PointedT"   (GAT_Cyt → FAT_Cyt)
    • Reaction "BarD PonDPi to FADPi FAD"   (BarbedD_Cyt + PointedDPi_Cyt → FADPi_Cyt + FAD_Cyt)
    • Reaction "GADPi to GADPiBThy"   (GADPi_Cyt + BThy_Cyt → GADPiBThy_Cyt)
    • Reaction "CBarbedT_FRAP"   (CBarbedT_Cyt → CBarbedT_dark_Cyt)
    • Reaction "CBarbedT_dark_to BarbedT"   (Cap_dark_Cyt + BarbedT_Cyt → CBarbedT_dark_Cyt)
    • Reaction "CBarbedT_FRAP1"   (CBarbedDPi_Cyt → CBarbedDPi_dark_Cyt)
    • Reaction "CBrbedDPi_dark_to CBarbedDPi"   (BarbedDPi_Cyt + Cap_dark_Cyt → CBarbedDPi_dark_Cyt)
    • Reaction "CBarbedT_FRAP2"   (CBarbedD_Cyt → CBarbedD_dark_Cyt)
    • Reaction "CBarbedD_dark_toCBarbedD"   (Cap_dark_Cyt + BarbedD_Cyt → CBarbedD_dark_Cyt)
    • Reaction "Cap_conversion"   (Cap_dark_Cyt → Cap_Cyt)
    • Reaction "Cap_FRAP"   (Cap_Cyt → Cap_dark_Cyt)
    • Reaction "BarbedT to CBarbedT1"   (BarbedT_Cyt + Cap_Cyt → CBarbedT_Cyt)
    • Reaction "BarbedDPi to CBarbedDPi1"   (BarbedDPi_Cyt + Cap_Cyt → CBarbedDPi_Cyt)
    • Reaction "BarbedD to CBarbedD1"   (BarbedD_Cyt + Cap_Cyt → CBarbedD_Cyt)
    • Reaction "reaction0"   (VASP_Cyt → VASP_BarbedD_Cyt)
    • Reaction "reaction1"   (VASP_Cyt → VASP_BarbedT_Cyt)
    • Reaction "reaction2"   (VASP_Cyt → VASP_BarbedDPi_Cyt)
    • Reaction "GAT to BarbedT"   (GAT_Cyt → FAT_Cyt)
    • Reaction "CofFAD to Cof BarD PonD"   (CofFAD2_Cyt → BarbedD_Cyt + PointedD_Cyt + 2 Cof_Cyt)
    • Reaction "FADPi to FAD"   (FADPi_Cyt → FAD_Cyt)
    • Reaction "ArpFAT to ArpFADPi"   (PointedTArpFAT_Cyt → PointedTArpFADPi_Cyt)
    • Reaction "GADPi to PointedD"   (GADPi_Cyt + PointedD_Cyt → FAD_Cyt + PointedDPi_Cyt)
    • Reaction "BarDPi PoinDPi to 2FADPi"   (BarbedDPi_Cyt + PointedDPi_Cyt → 2 FADPi_Cyt)
    • Reaction "PTAFAT to PDPiAFAT"   (PointedTArpFAT_Cyt → PointedDPiArpFAT_Cyt)
    • Reaction "GAT to PointedDPi"   (GAT_Cyt + PointedDPi_Cyt → PointedT_Cyt + FADPi_Cyt)
    • Reaction "GADPi to BarbedD"   (BarbedD_Cyt + GADPi_Cyt → BarbedDPi_Cyt + FAD_Cyt)
    • Reaction "Cof FAD to CofFAD"   (FAD_Cyt + Cof_Cyt → CofFAD1_Cyt)
    • Reaction "GAD to GADProf"   (Prof_Cyt + GAD_Cyt → GADProf_Cyt)
    • Reaction "BarDPi PonT to FADPi FAT"   (BarbedDPi_Cyt + PointedT_Cyt → FAT_Cyt + FADPi_Cyt)
    • Reaction "GAD to BarbedDPi"   (GAD_Cyt + BarbedDPi_Cyt → FADPi_Cyt + BarbedD_Cyt)
    • Reaction "GADProf to BarbedD"   (GADProf_Cyt + BarbedD_Cyt → FAD_Cyt + ProfBD_Cyt)
    • Reaction "ProfBT_dis"   (ProfBT_Cyt → BarbedT_Cyt + Prof_Cyt)
    • Reaction "ProfBDPi_to_ProfBD"   (ProfBDPi_Cyt → ProfBD_Cyt)
    • Reaction "GAD to BarbedD"   (GAD_Cyt → FAD_Cyt)
    • Reaction "PointedT to GAT"   (PointedT_Cyt → GAT_Cyt)
    • Reaction "PDAFAT to PDAFADPi"   (PointedDArpFAT_Cyt → PointedDArpFADPi_Cyt)
    • Reaction "GAProf_GATProf"   (GAProf_Cyt → GATProf_Cyt)
    • Reaction "PDPiAFADPi to PDPiAFAD"   (PointedDPiArpFADPi_Cyt → PointedDPiArpFAD_Cyt)
    • Reaction "BarT PonDPi to FADPi FAT"   (PointedDPi_Cyt + BarbedT_Cyt → FADPi_Cyt + FAT_Cyt)
    • Reaction "GADPi to GAD"   (GADPi_Cyt → GAD_Cyt)
    • Reaction "BarDPi PonD to FADPi FAD"   (BarbedDPi_Cyt + PointedD_Cyt → FADPi_Cyt + FAD_Cyt)
    • Reaction "GADPi to PointedT"   (PointedT_Cyt + GADPi_Cyt → FAT_Cyt + PointedDPi_Cyt)
    • Reaction "PDAFADPi to PDAFAD"   (PointedDArpFADPi_Cyt → PointedDArpFAD_Cyt)
    • Reaction "PointedDPiArp dissociate FAD"   (PointedDPiArpFAD_Cyt → Arp23_Cyt + PointedDPi_Cyt + FAD_Cyt)
    • Reaction "PTAFADPi to PDPiAFADPi"   (PointedTArpFADPi_Cyt → PointedDPiArpFADPi_Cyt)
    • Reaction "GAT to BarbedDPi"   (GAT_Cyt + BarbedDPi_Cyt → BarbedT_Cyt + FADPi_Cyt)
    • Reaction "PointedDPi to PointedD"   (PointedDPi_Cyt → PointedD_Cyt)
    • Reaction "GADPiBthy to GADBthy"   (GADPiBThy_Cyt → GADBThy_Cyt)
    • Reaction " BarbedT to GAT"   (BarbedT_Cyt → GAT_Cyt)
    • Reaction "BarbedT PointedD to FAT FAD"   (BarbedT_Cyt + PointedD_Cyt → FAD_Cyt + FAT_Cyt)
    • Reaction "BarbedT to BarbedDPi1"   (ProfBT_Cyt → ProfBDPi_Cyt)
    • Reaction "PDPiAFAT to PDAFAT"   (PointedDPiArpFAT_Cyt → PointedDArpFAT_Cyt)
    • Reaction "GADPiProf to BarbedDPi"   (GADPiProf_Cyt + BarbedDPi_Cyt → FADPi_Cyt + ProfBDPi_Cyt)
    • Reaction "GADPi to GADPiProf"   (GADPi_Cyt + Prof_Cyt → GADPiProf_Cyt)
    • Reaction "CofFADPi to CofFAD1"   (CofFADPi_Cyt → CofFAD1_Cyt)
    • Reaction "BarbedDPi to BarbedD"   (BarbedDPi_Cyt → BarbedD_Cyt)
    • Reaction "GA_GAD"   (GA_Cyt → GAD_Cyt)
    • Reaction "GA_GAT"   (GA_Cyt → GAT_Cyt)
    • Reaction "GAProf_GADProf"   (GAProf_Cyt → GADProf_Cyt)
    • Reaction "GATProf to BarbedD"   (BarbedD_Cyt + GATProf_Cyt → FAD_Cyt + ProfBT_Cyt)
    • Reaction "PDPiAFAT to PDPiAFADPi"   (PointedDPiArpFAT_Cyt → PointedDPiArpFADPi_Cyt)
    • Reaction "GAT to GATProf"   (GAT_Cyt + Prof_Cyt → GATProf_Cyt)
    • Reaction "GAT to BarbedD"   (GAT_Cyt + BarbedD_Cyt → BarbedT_Cyt + FAD_Cyt)
    • Reaction "ProfBD_dis"   (ProfBD_Cyt → BarbedD_Cyt + Prof_Cyt)
    • Reaction "ProfBDPi_dis"   (ProfBDPi_Cyt → Prof_Cyt + BarbedDPi_Cyt)
    • Reaction "BarbedT to BarbedDPi"   (BarbedT_Cyt → BarbedDPi_Cyt)
    • Reaction "GADPiProf to BarbedD"   (BarbedD_Cyt + GADPiProf_Cyt → FAD_Cyt + ProfBDPi_Cyt)
    • Reaction "GAD to PointedD"   (GAD_Cyt → FAD_Cyt)
    • Reaction "PointedTArp dissociate FAD"   (PointedTArpFAD_Cyt → FAD_Cyt + Arp23_Cyt + PointedT_Cyt)
    • Reaction "GADPiProf to GADProf"   (GADPiProf_Cyt → GADProf_Cyt)
    • Reaction "GADProf to BarbedT"   (GADProf_Cyt + BarbedT_Cyt → FAT_Cyt + ProfBD_Cyt)
    • Reaction "GAD to BarbedT"   (GAD_Cyt + BarbedT_Cyt → FAT_Cyt + BarbedD_Cyt)
    • Reaction "BarbedDPi to GADPi"   (BarbedDPi_Cyt → GADPi_Cyt)
    • Reaction "PTAFAD to PDPiAFAD"   (PointedTArpFAD_Cyt → PointedDPiArpFAD_Cyt)
    • Reaction "GAD to GADBThy"   (GAD_Cyt + BThy_Cyt → GADBThy_Cyt)
    • Reaction "GADPi to BarbedDPi"   (GADPi_Cyt → FADPi_Cyt)
    • Reaction "PointedT to PointedDPi"   (PointedT_Cyt → PointedDPi_Cyt)
    • Reaction "PointedTArp dissociate FAT"   (PointedTArpFAT_Cyt → FAT_Cyt + Arp23_Cyt + PointedT_Cyt)
    • Reaction "GADPi to BarbedT"   (BarbedT_Cyt + GADPi_Cyt → BarbedDPi_Cyt + FAT_Cyt)
    • Reaction "PDPiAFADPi to PDAFADPi"   (PointedDPiArpFADPi_Cyt → PointedDArpFADPi_Cyt)
    • Reaction "PDPiAFAD to PDAFAD"   (PointedDPiArpFAD_Cyt → PointedDArpFAD_Cyt)
    • Reaction "PointedDPi to GADPi"   (PointedDPi_Cyt → GADPi_Cyt)
    • Reaction "ArpFADPi to ArpFAD"   (PointedTArpFADPi_Cyt → PointedTArpFAD_Cyt)
    • Reaction "GAD to PointedDPi"   (GAD_Cyt + PointedDPi_Cyt → FADPi_Cyt + PointedD_Cyt)
    • Reaction "GAT to PointedD"   (PointedD_Cyt + GAT_Cyt → PointedT_Cyt + FAD_Cyt)
    • Reaction "PointedTArp dissociate FADPi"   (PointedTArpFADPi_Cyt → PointedT_Cyt + FADPi_Cyt + Arp23_Cyt)
    • Reaction "GAT to GATBThy"   (BThy_Cyt + GAT_Cyt → GATBThy_Cyt)
    • Reaction "FAT to FADPi"   (FAT_Cyt → FADPi_Cyt)
    • Reaction "2CofFADcounter to BarD PonD"   (2 CofFADcounter_Cyt → BarbedD_Cyt + 2 Cof_Cyt + PointedD_Cyt)
  • Compartment "EC".   (type: Volume)
  • Compartment "PM".   (type: Membrane)
    • Species "ActiveArp_PM"
    • Species "ActiveNWASP_PM"
    • Reaction "Prof Branching FADPi"   (2 GATProf_Cyt + ActiveArp_PM + FADPi_Cyt → BarbedT_Cyt + 2 Prof_Cyt + PointedTArpFADPi_Cyt + ActiveNWASP_PM)
    • Reaction "Arp23 binds Active NWASP"   (ActiveNWASP_PM + Arp23_Cyt → ActiveArp_PM)
    • Reaction "Branching FADPi"   (FADPi_Cyt + 2 GAT_Cyt + ActiveArp_PM → PointedTArpFADPi_Cyt + ActiveNWASP_PM + BarbedT_Cyt)
    • Reaction "Prof Branching FAT"   (2 GATProf_Cyt + ActiveArp_PM + FAT_Cyt → 2 Prof_Cyt + PointedTArpFAT_Cyt + ActiveNWASP_PM + BarbedT_Cyt)
    • Reaction "Prof Branching FAD"   (2 GATProf_Cyt + ActiveArp_PM + FAD_Cyt → BarbedT_Cyt + ActiveNWASP_PM + 2 Prof_Cyt + PointedTArpFADPi_Cyt)
    • Reaction "Branching FAT"   (2 GAT_Cyt + ActiveArp_PM + FAT_Cyt → PointedTArpFAT_Cyt + ActiveNWASP_PM + BarbedT_Cyt)
    • Reaction "Branching FAD"   (2 GAT_Cyt + ActiveArp_PM + FAD_Cyt → PointedTArpFAD_Cyt + ActiveNWASP_PM + BarbedT_Cyt)
2018-07-12T19:23:17+00:00 February 16th, 2018|biomodel|