Name: “Spine Model Final Rangamani et al PNAS 2016 “
Saved: Wed, 24 Aug 2016 16:16:07 GMT
vcell identifier: biomodel-102061382
Owned by: “prangamani”
- Compartment "c0". (type: Volume)
- Compartment "Cytoplasm". (type: Volume)
- Species "F_actin"
- Species "CaMKII_F_actin"
- Species "Il1_act"
- Species "Myoppase"
- Species "Myoppase_act"
- Species "ROCK"
- Species "Il1"
- Species "RhoGTP"
- Species "ROCK_act"
- Species "LIMK"
- Species "LIMK_P"
- Species "RhoGAP_act"
- Species "RhoGDP"
- Species "RhoGEF"
- Species "RhoGEF_act"
- Species "RhoGAP"
- Species "Ng"
- Species "CaM_Ng"
- Species "SSH1_act"
- Species "cdc42GTP"
- Species "WASP"
- Species "PP1"
- Species "PP1_act"
- Species "MLC"
- Species "MLC_p"
- Species "arp23"
- Species "WASP_act"
- Species "B"
- Species "R"
- Species "cdc42GDP"
- Species "Ca_CaM"
- Species "Bp"
- Species "CaM"
- Species "arp23_act"
- Species "SSH1"
- Species "Ca"
- Species "CaMKII"
- Species "CaMKIIp"
- Species "G_actin"
- Species "CaMKII_G_actin"
- Species "Calcineurin_act"
- Species "Cdc42GEF"
- Species "cdc42GEF_act"
- Species "Cofilin_p"
- Species "Calcineurin"
- Species "cofilin_act"
- Reaction "Myoppase inactivation by ROCK" (Myoppase_act → Myoppase)
- Reaction "Cofilin inactivation by LIMK" (cofilin_act → Cofilin_p)
- Reaction "PP1 inactivation by CaMKII" (PP1_act → PP1)
- Reaction "calcium binding calmodulin" (3 Ca + CaM → Ca_CaM)
- Reaction "calcinuerin inactivation" (Calcineurin_act → Calcineurin)
- Reaction "Cofilin activation through SSH1 dephosphorylation" (Cofilin_p → cofilin_act)
- Reaction "RhoGTP hydrolysis" (RhoGTP → RhoGDP)
- Reaction "SSH1 dephosphorylation by CaN" (SSH1 → SSH1_act)
- Reaction "cdc42 activates WASP" (cdc42GTP + WASP → WASP_act)
- Reaction "cdc42 hydrolysis" (cdc42GTP → cdc42GDP)
- Reaction "LIMK activation by ROCK" (LIMK → LIMK_P)
- Reaction "MLC Phosphorylation by ROCK" (MLC → MLC_p)
- Reaction "Cdc42 GEF inactivation" (cdc42GEF_act → Cdc42GEF)
- Reaction "Arp23 inactivation" (arp23_act → arp23)
- Reaction "Barbed ends" (∅ → B)
- Reaction "RhoGEF activation by CaMKII" (RhoGEF → RhoGEF_act)
- Reaction "Il1 inactivation" (Il1_act → Il1)
- Reaction "Il1 activation by CaN" (Il1 → Il1_act)
- Reaction "Arp23 activation" (arp23 + WASP_act → arp23_act)
- Reaction "severing" (F_actin → G_actin)
- Reaction "CaMKII activation by CaM" (CaMKII → CaMKIIp)
- Reaction "PP1 activation by IL1" (PP1 → PP1_act)
- Reaction "cdc42 activation" (cdc42GDP → cdc42GTP)
- Reaction "pushing barbed ends" (∅ → Bp)
- Reaction "CaMKII sequestration of G-actin" (CaMKII + G_actin → CaMKII_G_actin)
- Reaction "Calmodulin binding neurogranin" (Ng + CaM → CaM_Ng)
- Reaction "Radius" (∅ → R)
- Reaction "RhoGAP inactivation by PP1" (RhoGAP_act → RhoGAP)
- Reaction "RhoGTP activation by RhoGEF" (RhoGDP → RhoGTP)
- Reaction "Myoppase activation by autodephosphorylation" (Myoppase → Myoppase_act)
- Reaction "Rho GEF inactivation" (RhoGEF_act → RhoGEF)
- Reaction "Calcineurin activation by CaM" (Calcineurin → Calcineurin_act)
- Reaction "LIMK inactivation by ROCK" (LIMK_P → LIMK)
- Reaction "MLC dephosphorylation" (MLC_p → MLC)
- Reaction "CaMKII inactivation" (CaMKIIp → CaMKII)
- Reaction "ROCK activation by Rho" (ROCK + RhoGTP → ROCK_act)
- Reaction "cdc42 GEF activation" (Cdc42GEF → cdc42GEF_act)
- Reaction "myosin phosphatase activation basal" (Myoppase → Myoppase_act)
- Reaction "MLC phosphorylation basal" (MLC → MLC_p)
- Reaction "ROCK inactivation 1" (ROCK_act → ∅)
- Reaction "RhoGAP activation by CaMKII" (RhoGAP → RhoGAP_act)
- Reaction "CaMKII sequestration of F-actin" (CaMKII + F_actin → CaMKII_F_actin)
- Reaction "SSH1 phosphorylation by CaMKIIp" (SSH1_act → SSH1)
- Reaction "Actin growth " (F_actin + arp23_act + G_actin → F_actin)
- Compartment "plasma membrane". (type: Membrane)