Name: “Calebiro_PLoS-Biol_2009”
Saved: Tue, 18 Aug 2009 12:56:49 GMT
vcell identifier: biomodel-34855932
Owned by: “davide.calebiro”
- Compartment "IC_compartment". (type: Volume)
- Compartment "extra". (type: Volume)
- Species "ligand_extra"
- Species "removed_ligand_extra"
- Species "perfusion_speed_extra"
- Reaction "reaction0" (ligand_extra → removed_ligand_extra)
- Compartment "cyto". (type: Volume)
- Species "ligand_cyto"
- Species "ATP_cyto"
- Species "G_a_s_ICSC_cyto"
- Species "bg_cyto"
- Species "R2C2_cyto"
- Species "c3_R2C2_cyto"
- Species "internalized_GPCR_cyto"
- Species "cAMP_cyto"
- Species "PKA_active_cyto"
- Species "G_protein_cyto"
- Species "G_a_s_cyto"
- Species "AMP_cyto"
- Species "GRK_cyto"
- Species "c_R2C2_cyto"
- Species "c2_R2C2_cyto"
- Species "GRK_bg_cyto"
- Species "G_GDP_cyto"
- Species "PDE4_cyto"
- Species "G_GDP_ICSC_cyto"
- Species "GRK_bg_ICSC_cyto"
- Species "G_protein_ICSC_cyto"
- Species "bg_ICSC_cyto"
- Species "GRK_ICSC_cyto"
- Species "recycling_GPCR_cyto"
- Reaction "trimer_ICSC" (bg_ICSC_cyto + G_GDP_ICSC_cyto → G_protein_ICSC_cyto)
- Reaction "GTPase" (G_a_s_cyto → G_GDP_cyto)
- Reaction "bg_binds_GRK1" (bg_ICSC_cyto + GRK_ICSC_cyto → GRK_bg_ICSC_cyto)
- Reaction "B2" (cAMP_cyto + c_R2C2_cyto → c2_R2C2_cyto)
- Reaction "A1" (cAMP_cyto + c2_R2C2_cyto → c3_R2C2_cyto)
- Reaction "trimer" (bg_cyto + G_GDP_cyto → G_protein_cyto)
- Reaction "A2" (c3_R2C2_cyto + cAMP_cyto → PKA_active_cyto)
- Reaction "GTPase_G_a_s-ICSC" (G_a_s_ICSC_cyto → G_GDP_ICSC_cyto)
- Reaction "pde4" (cAMP_cyto → AMP_cyto)
- Reaction "bg_binds_GRK" (GRK_cyto + bg_cyto → GRK_bg_cyto)
- Reaction "B1" (R2C2_cyto + cAMP_cyto → c_R2C2_cyto)
- Compartment "cyto_mem". (type: Membrane)
- Species "GPCR_cyto_mem"
- Species "G_GPCR_cyto_mem"
- Species "ligand_GPCR_cyto_mem"
- Species "ligand_internalizer_cyto_mem"
- Species "ligand_G_GPCR_cyto_mem"
- Species "AC_cyto_mem"
- Species "ligand_GPCR_p_cyto_mem"
- Species "AC_active_cyto_mem"
- Reaction "G_binds_GPCR" (GPCR_cyto_mem + G_protein_cyto → G_GPCR_cyto_mem)
- Reaction "GPCR_recycling" (recycling_GPCR_cyto → GPCR_cyto_mem)
- Reaction "GRK" (ligand_GPCR_cyto_mem → ligand_GPCR_p_cyto_mem)
- Reaction "GPCR_fast_recycling" (internalized_GPCR_cyto → GPCR_cyto_mem)
- Reaction "GPCR_internalization" (ligand_G_GPCR_cyto_mem → internalized_GPCR_cyto + G_protein_cyto)
- Reaction "AC_active" (ATP_cyto → cAMP_cyto)
- Reaction "ligand_binds_GPCR" (GPCR_cyto_mem + ligand_extra → ligand_GPCR_cyto_mem)
- Reaction "AC_basal" (ATP_cyto → cAMP_cyto)
- Reaction "AC_activation" (G_a_s_cyto + AC_cyto_mem → AC_active_cyto_mem)
- Reaction "ligand_binds_G_GPCR" (ligand_extra + G_GPCR_cyto_mem → ligand_G_GPCR_cyto_mem)
- Reaction "activate_Gs" (ligand_G_GPCR_cyto_mem → bg_cyto + G_a_s_cyto + ligand_GPCR_cyto_mem)
- Reaction "G_binds_ligand_GPCR" (ligand_GPCR_cyto_mem + G_protein_cyto → ligand_G_GPCR_cyto_mem)
- Reaction "GRK_bg" (ligand_GPCR_cyto_mem → ligand_GPCR_p_cyto_mem)
- Reaction "ligand_internalization" (ligand_extra → ligand_cyto)
- Compartment "IC_compartment_mem". (type: Membrane)
- Species "ligand_GPCR_IC_compartment_mem"
- Species "GPCR_IC_compartment_mem"
- Species "AC_IC_compartment_mem"
- Species "ligand_GPCR_p_IC_compartment_mem"
- Species "G_GPCR_IC_compartment_mem"
- Species "AC_active_IC_compartment_mem"
- Species "ligand_G_GPCR_IC_compartment_mem"
- Reaction "activate_Gs1" (ligand_G_GPCR_IC_compartment_mem → G_a_s_ICSC_cyto + ligand_GPCR_IC_compartment_mem + bg_ICSC_cyto)
- Reaction "AC_basal1" (ATP_cyto → cAMP_cyto)
- Reaction "GPCR_ICSC_to_recycing-comp" (ligand_G_GPCR_IC_compartment_mem → recycling_GPCR_cyto + G_protein_ICSC_cyto)
- Reaction "AC_activation1" (G_a_s_ICSC_cyto + AC_IC_compartment_mem → AC_active_IC_compartment_mem)
- Reaction "GRK_bg1" (ligand_GPCR_IC_compartment_mem → ligand_GPCR_p_IC_compartment_mem)
- Reaction "ligand_binds_G_GPCR1" (ligand_cyto + G_GPCR_IC_compartment_mem → ligand_G_GPCR_IC_compartment_mem)
- Reaction "GPCR_to_ICSC" (internalized_GPCR_cyto → GPCR_IC_compartment_mem)
- Reaction "AC_active1" (ATP_cyto → cAMP_cyto)
- Reaction "G_binds_ligand_GPCR1" (ligand_GPCR_IC_compartment_mem + G_protein_ICSC_cyto → ligand_G_GPCR_IC_compartment_mem)
- Reaction "G_binds_GPCR1" (GPCR_IC_compartment_mem + G_protein_ICSC_cyto → G_GPCR_IC_compartment_mem)
- Reaction "GRK1" (ligand_GPCR_IC_compartment_mem → ligand_GPCR_p_IC_compartment_mem)
- Reaction "ligand_binds_GPCR1" (GPCR_IC_compartment_mem + ligand_cyto → ligand_GPCR_IC_compartment_mem)