Virtual Cell at UConn


BioNetGen stand-alone


Modeling with BioNetGen


  1. Start from The latest BioNetGen tutorial - book chapter
  2. Check examples at STEP-BY-STEP TUTORIAL at ICSB October 1st, 2007
  3. EXAMPLES FOR THE TUTORIAL at ICSB October 1st, 2007
  4. Slides from BNG workshop June 24th, 2009, UCHC.
You may also check other resources:

  1. Biological Motivation for Rule-based modeling (pdf)
  2. Science STKE review of rule-based modeling(pdf)
  3. BioNetGen - powerpoint tutorial (pdf)
  4. BioNetGen - powerpoint Tutorial on EGFR (pdf)
  5. BioNetGen@VCell UserGuide
  6. Detailed BioNetGen modeling tutorial (html)
  7. Tutorial at q-bio Santa Fe, 08/08/2007

The first rule-based modeling workshop June 24-25, 2009!!!! Click here!