Name: “PI cycle Figure 6,7 & S9”
Saved: Sep 18, 2020
vcell identifier: biomodel-189512756
Owned by: “Myeong”
- Compartment "EX". (type: Volume)
- Species "IP3_pipette"
- Species "oxoM_EX"
- Species "OxoM_conc_EX"
- Species "K_EX"
- Reaction "Oxo_appl" (OxoM_conc_EX → oxoM_EX)
- Compartment "Ca_store". (type: Volume)
- Species "Ca_Ca_store"
- Compartment "C". (type: Volume)
- Species "IP3_PH_YFP_C"
- Species "C1_dom_C"
- Species "K_C"
- Species "Ca_C"
- Species "IP3_LIBRAvIII_C"
- Species "LIBRAvIII_C"
- Species "PH_YFP_C"
- Species "Ca_Fura4F_C"
- Species "Fura4F_C"
- Species "IP3_C"
- Species "Palk_C1"
- Species "Palk_C2"
- Species "Palk_C3"
- Species "Palk_O4"
- Species "P4M_C"
- Species "FAPP1_C"
- Reaction "Cabind_Fura4F" (Ca_C + Fura4F_C → Ca_Fura4F_C)
- Reaction "IP3_LibraVIII" (IP3_C + LIBRAvIII_C → IP3_LIBRAvIII_C)
- Reaction "IP3deg_Palk" (IP3_C → ∅)
- Reaction "r12" (Palk_C1 → Palk_C2)
- Reaction "r23" (Palk_C2 → Palk_C3)
- Reaction "r24" (Palk_C2 → Palk_O4)
- Reaction "PH_YFP_IP3" (PH_YFP_C + IP3_C → IP3_PH_YFP_C)
- Reaction "IP3Pase_FDH" (IP3_C → ∅)
- Compartment "M". (type: Membrane)
- Species "PI4P_M"
- Species "PH_YFP_PIP2_M"
- Species "KCNQ_M"
- Species "RLG_GDP_M"
- Species "RL_M"
- Species "GaGTP_PLC_M"
- Species "GaGTP_M"
- Species "RLGbeta_M"
- Species "Gbeta_M"
- Species "RGbeta_M"
- Species "R_M"
- Species "boundPIP2_M"
- Species "G_GDP_M"
- Species "RG_GDP_M"
- Species "Ga_GDP_M"
- Species "DAG_M"
- Species "PA_2AG_M"
- Species "PLC_M"
- Species "PIP2_M"
- Species "C1_DAG_M"
- Species "GaGDP_PLC_M"
- Species "KCNQ_PIP2_M"
- Species "PI_M"
- Species "P4M_PI4P_M"
- Reaction "PLC_on_PI4P" (PI4P_M → DAG_M)
- Reaction "NE_RG" (RG_GDP_M → GaGTP_M + RGbeta_M)
- Reaction "L1" (R_M + oxoM_EX → RL_M)
- Reaction "PIP5K_5Pase" (PI4P_M → PIP2_M)
- Reaction "NE_G" (G_GDP_M → GaGTP_M + Gbeta_M)
- Reaction "GTPase_Ga" (GaGTP_M → Ga_GDP_M)
- Reaction "PIP2_buffering" (PIP2_M → boundPIP2_M)
- Reaction "L2beta" (RGbeta_M + oxoM_EX → RLGbeta_M)
- Reaction "NE_RLG" (RLG_GDP_M → GaGTP_M + RLGbeta_M)
- Reaction "NE_GaP" (GaGDP_PLC_M → GaGTP_PLC_M)
- Reaction "PH_YFP_PIP2" (PIP2_M + PH_YFP_C → PH_YFP_PIP2_M)
- Reaction "VSP" (PIP2_M → PI4P_M)
- Reaction "G1beta" (R_M + Gbeta_M → RGbeta_M)
- Reaction "DAGPase" (DAG_M → PA_2AG_M)
- Reaction "PI4K_4Pase_M" (PI_M → PI4P_M)
- Reaction "G2beta" (RL_M + Gbeta_M → RLGbeta_M)
- Reaction "PLCdiss" (GaGDP_PLC_M → PLC_M + Ga_GDP_M)
- Reaction "L2" (RG_GDP_M + oxoM_EX → RLG_GDP_M)
- Reaction "PLCassoc" (GaGTP_M + PLC_M → GaGTP_PLC_M)
- Reaction "G1" (G_GDP_M + R_M → RG_GDP_M)
- Reaction "PIP2bindKCNQ" (PIP2_M + KCNQ_M → KCNQ_PIP2_M)
- Reaction "PIP2hydr" (PIP2_M → DAG_M + IP3_C)
- Reaction "IP3_dialysis" (IP3_pipette → IP3_C)
- Reaction "GTPase_GaP" (GaGTP_PLC_M → GaGDP_PLC_M)
- Reaction "G2" (G_GDP_M + RL_M → RLG_GDP_M)
- Reaction "reconstitution" (Ga_GDP_M + Gbeta_M → G_GDP_M)
- Reaction "C1bindDAG" (DAG_M + C1_dom_C → C1_DAG_M)
- Reaction "PIP5K_5Pase_G" (PI4P_G → PIP2_M)
- Reaction "PI_EX_M" (PI_E → PI_M)
- Reaction "PI4P_P4M_M" (PI4P_M + P4M_C → P4M_PI4P_M)
- Reaction "KCNQ2/3" (K_EX → K_C)
- Compartment "ERM". (type: Membrane)
- Species "inactiveIP3R"
- Species "noninactiveIP3R"
- Species "PI_E"
- Reaction "h_reaction_IP3Rinactivation" (noninactiveIP3R → inactiveIP3R)
- Reaction "RyR_Palk" (Ca_C → Ca_Ca_store)
- Reaction "leak_Palk" (Ca_C → Ca_Ca_store)
- Reaction "SERCA_Palk" (Ca_C → Ca_Ca_store)
- Reaction "ER_leak_flux_FDH" (Ca_C → Ca_Ca_store)
- Reaction "IP3R_flux_FDH" (Ca_C → Ca_Ca_store)
- Reaction "SERCA_flux_FDH" (Ca_C → Ca_Ca_store)
- Reaction "IP3R_Palk" (Ca_C → Ca_Ca_store)
- Compartment "Golgi_Vesicle_M". (type: Membrane)
- Species "PI4P_G"
- Species "PI_G"
- Species "P4M_PI4P_G"
- Species "FAPP1_PI4P_G"
- Reaction "PI4K_4Pase_G" (PI_G → PI4P_G)
- Reaction "PI_EX_G" (PI_E → PI_G)
- Reaction "PI4P_P4M_G" (P4M_C + PI4P_G → P4M_PI4P_G)
- Reaction "PI4P_FAPP1_G" (PI4P_G + FAPP1_C → FAPP1_PI4P_G)
- Reaction "Sac1_G" (PI4P_G → PI_G)