About acowan

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So far acowan has created 137 blog entries.

Teaching with VCell MathModels

2022-05-18T15:13:31+00:00 December 8th, 2021|News|

2021-12-8. A discussion of how to use a VCell MathModel to teach mathematical modeling in cellular systems has been published by the Carlier lab with contributions from Cowan and Loew. Find links to the paper and public VCell models on our published models page.

Martin et al., 2021

2022-05-17T18:14:45+00:00 October 5th, 2021|publication, publication-2021|

Computational Modeling of RNase, Antisense ORF0 RNA, and Intracellular Compartmentation and their Impact on the Life Cycle of the LINE Retrotransposon.
David Martin M, Brown DN, Ramos KS.
Computational and Structural Biotechnology Journal. 2021 19:5667-5677.
PUBMED:34765087
doi:10.1016/j.csbj.2021.10.003
VCell BioModels referenced in publication
user: seriously
Biomodel names:
biomodel name: Line1Activity_Full_July10_0202
biomodel name: Dicer_Check_MassAction
biomodel name: Dicer_Check_Michaelis_new
biomodel name: Exosome_Processing_Bodies_Continuous
biomodel name: Exosome_ReactionRules
biomodel name: RISC_mRNA_Deg_MassAction
biomodel name: RISC_mRNA_Deg_Michaelis_Menten
biomodel name: RNA Interference Mass Action

VCell Model of LINE-1 RNA lifecycle

2022-05-18T14:52:35+00:00 October 5th, 2021|News|

2021-10-05. A new publication by Martin et al. describes a VCell model of the lifecyle of LINE-1 RNA elements in order to understand their activation and propagation. Find links to the paper and public VCell models on our published models page.