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So far acowan has created 55 blog entries.

VCell 7.2 Released

2019-12-10T18:33:39+00:00 December 10th, 2019|News|

2019-12-10. VCell 7.2 has been released.  See the Release Notes for a full list of the many new features in VCell 7.2 including new functionality to store identifiers and text annotations for model components, a service linking VCell simulation with ImageJ image analysis functions, rate rules and assignment rules in ODE applications, improved SBML import along with several other improvements.

Getz et al., 2019

2019-07-11T15:21:08+00:00 June 15th, 2019|publication, publication-2019|

A predictive computational model reveals that giv/girdin serves as a tunable valve for egfr-stimulated cyclic amp signals.
Getz, M., L. Swanson, D. Sahoo, P. Ghosh, and P. Rangamani
Mol Biol Cell. 2019 30: 1621-1633.
PUBMED:31017840
doi:10.1091/mbc.E18-10-0630
VCell BioModels referenced in publication:
user: mgetz,   model name: A predictive computational model reveals that GIV/Girdin serves as a tunable valve for EGFR-stimulated Cyclic AMP Signals

biomodel-156134818

2019-07-11T15:13:14+00:00 June 15th, 2019|biomodel|

Name: “A predictive computational model reveals that GIV/Girdin serves as a tunable valve for EGFR-stimulated Cyclic AMP Signals”
Saved: Apr 30, 2019
vcell identifier: biomodel-156134818
Owned by: “mgetz”

download model (.vcml)

New model of GIV/girdin modulation of cyclic AMP signals

2019-11-08T20:53:14+00:00 June 13th, 2019|News|

2019-06-13. A new Molecular Biology of the Cell publication from the Rangamani lab uses VCell and COPASI to develop a model to examine cross-talk between receptor tyrosine kinases and G proteins that regulate cAMP levels.   Visit our published models page for links to the paper and to the VCell Biomodel.

Dreyer et al., 2019

2019-07-12T18:59:20+00:00 June 12th, 2019|publication, publication-2019|

Nutrient exchange in arbuscular mycorrhizal symbiosis from a thermodynamic point of view.
Dreyer, I., O. Spitz, K. Kanonenberg, K. Montag, M.R. Handrich, S. Ahmad, S. Schott-Verdugo, C. Navarro-Retamal, M.E. Rubio-Melendez, J.L. Gomez-Porras, J. Riedelsberger, M.A. Molina-Montenegro, A. Succurro, A. Zuccaro, S.B. Gould, P. Bauer, L. Schmitt, and H. Gohlke
New Phytol. 2019 222: 1043-1053.
PUBMED:30565261
doi:10.1111/nph.15646
VCell BioModels referenced in publication:
user: idreyer,   model name: AMF Symbiosis with SWEET

VCell models aid in design of SH2 domain biosensors

2019-11-08T20:41:13+00:00 June 4th, 2019|News|

2019-06-04. A new publication in Science Signaling  from the Haugh and Rao labs describes the use of VCell modeling to assist in designing improved SH2 domain biosensors of EGFR phosphorylation.   Visit our published models page for links to the paper and to the VCell Biomodel.

biomodel-94891280

2019-11-08T19:58:38+00:00 June 4th, 2019|biomodel|

Name: “Design and evaluation of engineered protein biosensors for live-cell imaging of EGFR phosphorylation”
Saved: May 19, 2015
vcell identifier: biomodel-94891280
Owned by: “jmhaugh”

download model (.vcml)