publication

A continuum model of mechanosensation based on contractility kit assembly.
Dolgitzer, D., Plaza-Rodriguez, A.I., Iglesias, M.A., Jacob, M.A.C. , Todd, B.A., Robinson, D., Iglesias, P.
Biophys J. 2024 Nov 8:S0006-3495(24)00708-2.
PUBMED:39521955
https://doi.org/10.1016/j.bpj.2024.10.020 
VCell BioModels referenced in the publication
user:Dolgitzer
biomodel name: Dolgitzer 2025 A Continuum Model of Mechanosensation Based on Contractility Kit Assembly

Multi-condensate state as a functional strategy to optimize the cell signaling output.
Chattaraj, A., & Shakhnovich, E. I.
Nat Commun. 2024 Jul 25;15(1):6268.
PUBMED:39054333
https://www.nature.com/articles/s41467-024-50489-5
VCell BioModels referenced in the publication
user:Ani
biomodel name: AC_public_OneCondensate_ARP_revised

Comparative Investigation of the Mechanisms of Calcium Response in Human and Murine Spermatozoa.
Korobkina, J. D., Panteleev, M. A., & Sveshnikova, A. N.
Biochemistry (Moscow), Supplement Series A: Membrane and Cell Biology, 18(2), 110-126.
https://link.springer.com/article/10.1134/S1990747824700132
VCell BioModels referenced in the publication
user:Juliajessica
biomodel name: MouseSpermCalcium

Reaction-diffusion modeling provides insights into biophysical carbon concentrating mechanisms in land plants.
Kaste, J. A., Walker, B. J., & Shachar-Hill, Y.
Plant Physiol. 2024 Jun 10:kiae324.
PUBMED:38857179
doi: 10.1093/plphys/kiae324

Dynamin1 long-and short-tail isoforms exploit distinct recruitment and spatial patterns to form endocytic nanoclusters.
Jiang, A., Kudo, K., Gormal, R.S., Ellis, S., Guo, S., Wallis, T.P., Longfield, S.F., Robinson, P.J., Johnson, M.E., Joensuu, M. and Meunier, F.A..
Nature Communications. 2024 May 14;15(1):4060.
PUBMED:38744819
doi: 10.1038/s41467-024-47677-8
VCell BioModels referenced in the publication
user:mejohnson81
biomodel name: DiffuseToCluster_WCoopDense
biomodel name: DiffuseToCluster_WithCoop

K⁺ and pH homeostasis in plant cells is controlled by a synchronized K⁺ /H⁺ antiport at the plasma and vacuolar membrane.
Li, K., Grauschopf, C., Hedrich, R., Dreyer, I. & Konrad, K.R.
New Phytologist. 2024 Feb;241(4):1525-1542.
PUBMED:38017688
doi:10.1111/nph.19436
VCell BioModels referenced in the publication
user: idreyer
biomodel name: Li_et_al_2024_NewPhytol_Guard_Cell_Homeostats

Computational evidence for multi-layer crosstalk between the cadherin-11 and PDGFR pathways.
Karagöz, Z., Passanha, F. R., Robeerst, L., van Griensven, M., LaPointe, V. L. S., Carlier, A.
Sci Rep 13, 15804 2023.
PUBMED:37737289
doi: 10.1038/s41598-023-42624-x
VCell BioModels referenced in the publication
user: ra_mb_jb_jmh
biomodel name: cdh11-pdgfr-erk-feedback-v2

G-actin diffusion is insufficient to achieve F-actin assembly in fast-treadmilling protrusions.
Appalabhotla, R., Butler, M. T., Bear, J. E., & Haugh, J. M.
Biophys J. 2023 Aug 28;S0006-3495(23)00553-2.
PUBMED:37644720
doi: 10.1016/j.bpj.2023.08.022
VCell BioModels referenced in the publication
user: ra_mb_jb_jmh
biomodel name: Figure 4
biomodel name: Figure 6 – Cytochalasin D Simulations
biomodel name: Figure S1 – G-actin diffusion 3D
biomodel name: Figure S4
biomodel name: Figure S5
mathmodel name: Figure 3 – Simulation Image and Line Scan; Figure 5 – Leading Edge Recovery and Line […]

Nuclear lamina strain states revealed by intermolecular force biosensor.
Danielsson, B.E., George Abraham, B., Mäntylä, E., Cabe, J.I., Mayer, C.R., Rekonen, A., Ek, F., Conway, D.E. and Ihalainen, T.O.
Nat Commun. 2023 Jun 30;14(1):3867
PUBMED:37391402
doi: 10.1038/s41467-023-39563-6

Beyond analytic solution: Analysis of FRAP experiments by spatial simulation of the forward problem.
Cowan, A.E. & Loew, L.M.
Biophys J. 2023 Jun 23;S0006-3495(23)00401-0
PUBMED:37353932/
doi: 10.1016/j.bpj.2023.06.013
VCell BioModels referenced in publication
user: les
biomodel name: FRAP_Membrane_Rel
biomodel name: FRAP_Cyt
biomodel name: FRAP_Cyt_Membrane_Binding
biomodel name: FRAP Condensate Droplet