Nosbisch et al., 2022

2023-07-18T00:03:39+00:00 March 31st, 2022|publication, publication-2022|

A kinetic model of phospholipase C-γ1 linking structure-based insights to dynamics of enzyme autoinhibition and activation. 
Nosbisch JL, Bear JE, Haugh JM.
J Biol Chem. 2022 May;298(5):101886.
PUBMED:35367415
doi: 10.1016/j.jbc.2022.101886
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biomodel name: Nosbisch PLCgamma1 2021
biomodel name: Nosbisch PLCgamma1 + polarization 2021

Martin et al., 2021

2022-05-17T18:14:45+00:00 October 5th, 2021|publication, publication-2021|

Computational Modeling of RNase, Antisense ORF0 RNA, and Intracellular Compartmentation and their Impact on the Life Cycle of the LINE Retrotransposon.
David Martin M, Brown DN, Ramos KS.
Computational and Structural Biotechnology Journal. 2021 19:5667-5677.
PUBMED:34765087
doi:10.1016/j.csbj.2021.10.003
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user: seriously
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biomodel name: Line1Activity_Full_July10_0202
biomodel name: Dicer_Check_MassAction
biomodel name: Dicer_Check_Michaelis_new
biomodel name: Exosome_Processing_Bodies_Continuous
biomodel name: Exosome_ReactionRules
biomodel name: RISC_mRNA_Deg_MassAction
biomodel name: RISC_mRNA_Deg_Michaelis_Menten
biomodel name: RNA Interference Mass Action

King et al., 2021

2022-05-17T13:58:10+00:00 September 22nd, 2021|publication, publication-2021|

The Influence of OAT1 Density and Functionality on Indoxyl Sulfate Transport in the Human Proximal Tubule: An Integrated Computational and In Vitro Study.
King J, Mihaila SM, Ahmed S, Truckenmüller R, Giselbrecht S, Masereeuw R, Carlier A.
Toxins. 2021 Sep 22;13(10):674.
PUBMED: 34678967
doi:10.3390/toxins13100674
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Eroume et al., 2021

2021-10-12T19:36:57+00:00 September 12th, 2021|publication, publication-2021|

Exploring the influence of cytosolic and membrane FAK activation on YAP/TAZ nuclear translocation.
Eroumé KS; Cavill R; Staňková K; de Boer J; Carlier A
Biophys J. 2021 Sep 10;S0006-3495(21)00743–8.
PUBMED:34509508
doi:10.1016/j.bpj.2021.09.009
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Kerbai_BiophysJ_2021_YAPTAZ_Ksf_case3
Kerbai_BiophysJ_2021_YAPTAZ_Ksf_case4
Kerbai_BiophysJ_2021_YAPTAZ_Ksf_case5
Kerbai_BiophysJ_2021_YAPTAZ_noKsf_case1
Kerbai_BiophysJ_2021_YAPTAZ_noKsf_case2
Kerbai_BiophysJ_2021_YAPTAZ_noKsf_case3
Kerbai_BiophysJ_2021_YAPTAZ_noKsf_case4
Kerbai_BiophysJ_2021_YAPTAZ_noKsf_case5