publication – Page 2 – VCell- Modeling & Analysis Software

Korza et al., 2023

Michael Blinov 2023-05-12T20:27:47+00:00 March 12th, 2023|publication, publication-2022|

Expression of the 2Duf protein in wild-type Bacillus subtilis spores stabilizes inner membrane proteins and increases spore resistance to wet heat and hydrogen peroxide.
Korza G, DePratti S, Fairchild D, Wicander J, Kanaan J, Shames H, Nichols FC, Cowan A, Brul S, Setlow P.
Journal of Applied Microbiology. 2023 Mar 1;134(3):lxad040.
PUBMED:36841229
doi:10.1093/jambio/lxad040
VCell BioModels referenced in publication
user: dfairchild
biomodel name: Bacillus Spore Membrane FRAP Analysis

Khalilimeybodi et al., 2022

Michael Blinov 2024-03-17T02:35:20+00:00 February 16th, 2023|publication, publication-2023|

Mechanisms underlying divergent relationships between Ca²⁺ and YAP/TAZ signalling.
Khalilimeybodi, A., Fraley, S.I. & Rangamani, P.
J Physiol. 2023 Feb;601(3): 483-515.
PUBMED:36463416
doi:10.1113/JP283966
VCell BioModels referenced in the publication
user: prangamani
biomodel name: Khalilimeybodi et al. 2022 J Physiol

Ruiter et al., 2023

Michael Blinov 2023-03-09T02:02:50+00:00 February 1st, 2023|publication, publication-2022|

Optimization of Media Change Intervals through Hydrogels Using Mathematical Models.
Ruiter FA, King J, Swapnasrita S, Giselbrecht S.
Biomacromolecules. 2023 Feb 13;24(2):604-612.
PUBMED:36724373
doi:10.1021/acs.biomac.2c00961

Khan et al., 2023

Michael Blinov 2023-03-09T01:52:47+00:00 January 7th, 2023|publication, publication-2022|

Methodology for development of single cell dendritic spine (SCDS) synaptic tagging and capture model using Virtual Cell (VCell).
Khan R, Kulasiri D, Samarasinghe S.
MethodsX. 2023 Feb 11;10:102070.
PUBMED:36879764
doi:10.1016/j.mex.2023.102070

Khan et al., 2022

Michael Blinov 2022-11-22T21:22:12+00:00 November 22nd, 2022|publication, publication-2022|

A multifarious exploration of synaptic tagging and capture hypothesis in synaptic plasticity: Development of an integrated mathematical model and computational experiments.
Khan R, Kulasiri D, Samarasinghe S.
Journal of Theoretical Biology. 2022 Oct 21:111326.
PUBMED:36279957
doi:10.1016/j.jtbi.2022.111326

Mendonça et al., 2022

Michael Blinov 2022-11-22T21:05:25+00:00 November 22nd, 2022|publication, publication-2022|

Asynchronous glutamate release is enhanced in low release efficacy synapses and dispersed across the active zone.
Mendonça PR, Tagliatti E, Langley H, Kotzadimitriou D, Zamora-Chimal CG, Timofeeva Y, Volynski KE.
Nature communications. 2022 Jun 17;13(1):1-7.
PUBMED:35715404
doi:10.1038/s41467-022-31070-4

Sinner and Townsend, 2022

Michael Blinov 2022-10-03T22:00:00+00:00 October 3rd, 2022|publication, publication-2022|

Purification and characterization of sequential cobalamin-dependent radical SAM methylases ThnK and TokK in carbapenem β-lactam antibiotic biosynthesis.
Sinner EK, Townsend CA.
Methods in Enzymology. 2022; 669:29–44
PUBMED:35644176
https://doi.org/10.1016/bs.mie.2021.09.014

Paes et al., 2022

Michael Blinov 2023-12-03T18:00:26+00:00 July 19th, 2022|publication, publication-2023|

Computational investigation of the dynamic control of cAMP signaling by PDE4 isoform types.
Paes, D., Hermans, S., van den Hove, D., Vanmierlo, T., Prickaerts, J., & Carlier, A.
Biophys J. 2022 Jul 19;121(14):2693-2711.
PUBMED:35717559
doi: 10.1016/j.bpj.2022.06.019
VCell BioModels referenced in the publication
user: aureliecarlier
biomodel name: Carlier_cAMP_isoforms_v2
biomodel name: Carlier_cAMP_isoforms_cyclic_v2

Dreyer et al., 2022

acowan 2022-05-18T14:08:48+00:00 April 15th, 2022|publication, publication-2022|

Transporter networks can serve plant cells as nutrient sensors and mimic transceptor-like behavior.
Dreyer I, Li K, Riedelsberger J, Hedrich R, Konrad KR, Michard E.
iScience. 2022 Apr 15;25(4):104078.
PUBMED:35378857
doi:10.1016/j.isci.2022.104078
VCell BioModels referenced in publication
user: idreyer
Biomodel name: Dreyer_et_al_2022_iScience

Ulrich & Drennan, 2022

Michael Blinov 2023-05-02T23:10:42+00:00 April 6th, 2022|publication, publication-2022|

The Atypical Cobalamin-Dependent S-Adenosyl-l-Methionine Nonradical Methylase TsrM and Its Radical Counterparts.
Ulrich EC, Drennan CL
J Am Chem Soc. 2022 Apr 6;144(13):5673-5684
PUBMED:35344653
doi:10.1021/jacs.1c12064

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