Installers for SpringSaLaD Version 2.2
|Mac Users (.dmg file)||Unix Users (.sh file)||Windows Users (.exe file)||CheckSum sha256||CheckSum md5|
SpringSaLaD Tutorial, presented by Aniruddha Chattaraj (From the 2020 Computational Cell Biology Workshop)
Version 2.2 – released November, 2021
SpringSaLaD is now distributed with separate installers for Windows, Mac and Linux.
We added cluster statistics analysis to the post processing phase of the simulator; this includes time courses for: cluster size average, fractional frequency, standard deviation, histograms, cluster size occupancy analysis and cluster composition frequency histograms. All these are available for individual runs and as the mean of multiple stochastic runs. Special Acknowledgement to Ming Hao Wang for Developing the cluster analysis feature.
The 3D viewer feature requires OpenGL 2.4 or higher. If you have difficulties running the 3D viewer you may want to verify your OpenGL version and update at need. We recommend to download and use the OpenGL Extension Viewer, a free application.
Version 2.1 – released May, 2021
Updated to gluegen and jogl rc-2.4 libraries, OpenGL-2.4 compatibility.
Macroscopic on rate must be smaller than the diffusion limited on rate; the user is warned if this is not the case.
Corrected lambda computing for Irreversible reactions.
Version 2 – released November, 2017
The primary new feature is the ability to directly build models from atomic coordinates in pdb files. As illustrated here, this also includes an interactive 3D viewer that allows the user to directly compare the PDB structures to the coarse-grained linked spheres representation used in SpringSaLaD. Improvements to the organization of SpringSaLaD project files have also been made.