biomodel-257582676
Name: “DiffuseToCluster_WCoopDense”
Saved: Jun 23, 2023
vcell identifier: biomodel-257582676
Owned by: “mejohnson81”
biomodel-270899581
Name: “AC_public_OneCondensate_ARP_revised”
Saved: Apr 19, 2024
vcell identifier: biomodel-270899581
Owned by: “Ani”
biomodel-273924831
Name: “MouseSpermCalcium”
Saved: Aug 9, 2024
vcell identifier: biomodel-273924831
Owned by: “Juliajessica”
biomodel-279851639
Name: “Dolgitzer 2025 A Continuum Model of Mechanosensation Based on Contractility Kit Assembly”
Saved: Nov 25, 2024
vcell identifier: biomodel-279851639
Owned by: “Dolgitzer”
A VCell spatial model of Myosin II and cortexillin I assembly was published by Iglesias team
2024-11-08. The team of researchers from John Hopkins University used spatial modeling with VCell to analyze the role of Myosin II and cortexillin I assembly within the mechanoresponsive mechanism grounded in experimentally measured parameters.
Dolgitzer, D., Plaza-Rodríguez, A. I., Iglesias, M. A., Jacob, M. A. C., Todd, B., Robinson, D. N., & Iglesias, P. A. (2024). A continuum model of mechanosensation based on contractility kit assembly. Biophysical Journal. Nov 8:S0006-3495(24)00708-2.
https://pubmed.ncbi.nlm.nih.gov/39521955/
Dolgitzer et al, 2024
A continuum model of mechanosensation based on contractility kit assembly.
Dolgitzer, D., Plaza-Rodriguez, A.I., Iglesias, M.A., Jacob, M.A.C. , Todd, B.A., Robinson, D., Iglesias, P.
Biophys J. 2024 Nov 8:S0006-3495(24)00708-2.
PUBMED:39521955
https://doi.org/10.1016/j.bpj.2024.10.020
VCell BioModels referenced in the publication
user:Dolgitzer
biomodel name: Dolgitzer 2025 A Continuum Model of Mechanosensation Based on Contractility Kit Assembly
Computational Cell Biology workshop
2024-07-22-24. VCell and COPASI teams run 25th Annual Workshop on Computational Cell Biology. Nine students (one could not attend due to flights being cancelled) from Arkansas, Connecticut, New York, Ohio, Texas and Viginia worked with instructors for 3 days, developing their computational models. Thanks to NIH for the funding!
[…]Chattaraj & Shakhnovich, 2024
Multi-condensate state as a functional strategy to optimize the cell signaling output.
Chattaraj, A., & Shakhnovich, E. I.
Nat Commun. 2024 Jul 25;15(1):6268.
PUBMED:39054333
https://www.nature.com/articles/s41467-024-50489-5
VCell BioModels referenced in the publication
user:Ani
biomodel name: AC_public_OneCondensate_ARP_revised
Korobkina et al., 2024
Comparative Investigation of the Mechanisms of Calcium Response in Human and Murine Spermatozoa.
Korobkina, J. D., Panteleev, M. A., & Sveshnikova, A. N.
Biochemistry (Moscow), Supplement Series A: Membrane and Cell Biology, 18(2), 110-126.
https://link.springer.com/article/10.1134/S1990747824700132
VCell BioModels referenced in the publication
user:Juliajessica
biomodel name: MouseSpermCalcium
Kaste et al., 2024
Reaction-diffusion modeling provides insights into biophysical carbon concentrating mechanisms in land plants.
Kaste, J. A., Walker, B. J., & Shachar-Hill, Y.
Plant Physiol. 2024 Jun 10:kiae324.
PUBMED:38857179
doi: 10.1093/plphys/kiae324