Dynamics of homeostats: the basis of electrical, chemical, hydraulic, pH and calcium signaling in plants.
Contador-Álvarez, L., Rojas-Rocco, T., Rodríguez-Gómez, T., Rubio-Meléndez, M. E., Riedelsberger, J., Michard, E., & Dreyer, I.
Quantitative Plant Biology, 2025 Mar 21:6, e8.
https://doi.org/10.1017/qpb.2025.6
2025-03-09. Alberto Millan from Kite Corp and Lewis Lanier from UCSF published a study on ITAM-mediated human Natural killer cells signaling. VCell was used to create a rule-based model in .bngl (BioNetGen) format.
Millan, A. J., Allain, V., Nayak, I., Libang, J. B., Quijada-Madrid, L. M., Arakawa-Hoyt, J. S., … & Lanier, L. L. (2025). SYK negatively regulates ITAM-mediated human NK cell signaling and CD19-CAR NK cell efficacy. The Journal of Immunology, vkaf012
https://pubmed.ncbi.nlm.nih.gov/40073103/
SYK negatively regulates ITAM-mediated human NK cell signaling and CD19-CAR NK cell efficacy.
Millan, A. J., Allain, V., Nayak, I., Libang, J. B., Quijada-Madrid, L. M., Arakawa-Hoyt, J. S., … & Lanier, L. L.
The Journal of Immunology, vkaf012.
PUBMED: 40073103
https://doi.org/10.1093/jimmun/vkaf012
2025-02-28. The 26th Computational Cell Biology workshop took place ONLINE for the 5 days, February 24-28th. Cell biologists and biophysicists leaned how to use VCell (https://vcell.org/) and SpringSalad (https://vcell.org/ssalad) software to develop spatial and non-spatial models using deterministic, stochastic, agent- and rule-based approaches.
2024-12-18. VCell was represented at the American Society of Cell Biology Annual Meeting 2024 in San Diego. Michael Blinov and Margaret Johnson (John Hopkins University) led the session on Biophysical Modeling of the Cell on December 14th. On December 15th, Leslie Loew, Ann Cowan, Stephan Hoops (U Virginia) taught COPASI and VCell tutorials during the workshop on
Mathematical Modeling for Cell Biology.
Name: “DiffuseToCluster_WCoopDense”
Saved: Jun 23, 2023
vcell identifier: biomodel-257582676
Owned by: “mejohnson81”
Name: “AC_public_OneCondensate_ARP_revised”
Saved: Apr 19, 2024
vcell identifier: biomodel-270899581
Owned by: “Ani”
Name: “MouseSpermCalcium”
Saved: Aug 9, 2024
vcell identifier: biomodel-273924831
Owned by: “Juliajessica”
Name: “Dolgitzer 2025 A Continuum Model of Mechanosensation Based on Contractility Kit Assembly”
Saved: Nov 25, 2024
vcell identifier: biomodel-279851639
Owned by: “Dolgitzer”
2024-11-08. The team of researchers from John Hopkins University used spatial modeling with VCell to analyze the role of Myosin II and cortexillin I assembly within the mechanoresponsive mechanism grounded in experimentally measured parameters.
Dolgitzer, D., Plaza-Rodríguez, A. I., Iglesias, M. A., Jacob, M. A. C., Todd, B., Robinson, D. N., & Iglesias, P. A. (2024). A continuum model of mechanosensation based on contractility kit assembly. Biophysical Journal. Nov 8:S0006-3495(24)00708-2.
https://pubmed.ncbi.nlm.nih.gov/39521955/
