Adams et al., 2025
How the Topology of the Mitochondrial Inner Membrane Modulates ATP Production.
Raquel Adams, Nasrin Afzal, Mohsin Saleet Jafri, & Carmen A Mannella
Cells. 2025 Feb 11;14(4):257.
PUBMED: 39996730
doi: 10.3390/cells14040257
VCell at CellBio 2024
2024-12-18. VCell was represented at the American Society of Cell Biology Annual Meeting 2024 in San Diego. Michael Blinov and Margaret Johnson (John Hopkins University) led the session on Biophysical Modeling of the Cell on December 14th. On December 15th, Leslie Loew, Ann Cowan, Stephan Hoops (U Virginia) taught COPASI and VCell tutorials during the workshop on
Mathematical Modeling for Cell Biology.
biomodel-257582676
Name: “DiffuseToCluster_WCoopDense”
Saved: Jun 23, 2023
vcell identifier: biomodel-257582676
Owned by: “mejohnson81”
biomodel-270899581
Name: “AC_public_OneCondensate_ARP_revised”
Saved: Apr 19, 2024
vcell identifier: biomodel-270899581
Owned by: “Ani”
biomodel-273924831
Name: “MouseSpermCalcium”
Saved: Aug 9, 2024
vcell identifier: biomodel-273924831
Owned by: “Juliajessica”
biomodel-279851639
Name: “Dolgitzer 2025 A Continuum Model of Mechanosensation Based on Contractility Kit Assembly”
Saved: Nov 25, 2024
vcell identifier: biomodel-279851639
Owned by: “Dolgitzer”
A VCell spatial model of Myosin II and cortexillin I assembly was published by Iglesias team
2024-11-08. The team of researchers from John Hopkins University used spatial modeling with VCell to analyze the role of Myosin II and cortexillin I assembly within the mechanoresponsive mechanism grounded in experimentally measured parameters.
Dolgitzer, D., Plaza-Rodríguez, A. I., Iglesias, M. A., Jacob, M. A. C., Todd, B., Robinson, D. N., & Iglesias, P. A. (2024). A continuum model of mechanosensation based on contractility kit assembly. Biophysical Journal. Nov 8:S0006-3495(24)00708-2.
https://pubmed.ncbi.nlm.nih.gov/39521955/
Dolgitzer et al, 2024
A continuum model of mechanosensation based on contractility kit assembly.
Dolgitzer, D., Plaza-Rodriguez, A.I., Iglesias, M.A., Jacob, M.A.C. , Todd, B.A., Robinson, D., Iglesias, P.
Biophys J. 2024 Nov 8:S0006-3495(24)00708-2.
PUBMED:39521955
doi.org:10.1016/j.bpj.2024.10.020
VCell BioModels referenced in the publication
user:Dolgitzer
biomodel name: Dolgitzer 2025 A Continuum Model of Mechanosensation Based on Contractility Kit Assembly
Zhou et al., 2024
A noncanonical GTPase signaling mechanism controls exit from mitosis in budding yeast.
Xiaoxue Zhou, Shannon Y Weng, Stephen P Bell, & Angelika Amon.
Proc Natl Acad Sci U S A. 2024 Nov 5;121(45):e2413873121.
PUBMED: 39475649
doi.org: 10.1073/pnas.2413873121
Computational Cell Biology workshop
2024-07-22-24. VCell and COPASI teams run 25th Annual Workshop on Computational Cell Biology. Nine students (one could not attend due to flights being cancelled) from Arkansas, Connecticut, New York, Ohio, Texas and Viginia worked with instructors for 3 days, developing their computational models. Thanks to NIH for the funding!
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