biomodel-256364414
Name: “FRAP_membrane_Rel”
Saved: June 23, 2023
vcell identifier: biomodel-256364414
Owned by: “les”
biomodel-245335415
Name: “Aging Phenotypes”
Saved: May 4, 2023
vcell identifier: biomodel-245335415
Owned by: “aging_project”
Biophysical Modeling of the Cell special interests group at ASCB
Prof Margaret Johnson from John Hopkins University and Michael Blinov are hosting the Special Interest Subgroup session on Biophysical Modeling of the Cell at Cell Bio 2023 – an ASCB/EMBO (https://www.ascb.org/cellbio2023/) meeting in Boston, MA, December 2-6. The session will take place on Wednesday, December 6, 8:30 AM – 11:00 AM (https://www.ascb.org/cellbio2023/program/subgroups/).
Danielsson et al., 2023
Nuclear lamina strain states revealed by intermolecular force biosensor.
Danielsson, B.E., George Abraham, B., Mäntylä, E., Cabe, J.I., Mayer, C.R., Rekonen, A., Ek, F., Conway, D.E. and Ihalainen, T.O.
Nat Commun. 2023 Jun 30;14(1):3867
PUBMED:37391402
doi: 10.1038/s41467-023-39563-6
24th Annual Computational Cell Biology (CCB) workshop
2023-06-28. The 24th Annual Computational Cell Biology (CCB) workshop took place at the Center for Cell Analysis and Modeling (CCAM) on June 26-28th. 11 participants from all over the US (from Maryland to Illinois) came to Farmington to work on developing their modeling projects using VCell and COPASI software tools, designed and maintained at CCAM. The students were helped by a CCAM team consisting of Michael Blinov, Ann Cowan, Leslie Loew, Pedro Mendes, Ion Moraru, […]
Cowan & Loew, 2023
Beyond analytic solution: Analysis of FRAP experiments by spatial simulation of the forward problem.
Cowan, A.E. & Loew, L.M.
Biophys J. 2023 Jun 23;S0006-3495(23)00401-0
PUBMED:37353932/
doi: 10.1016/j.bpj.2023.06.013
VCell BioModels referenced in publication
user: les
biomodel name: FRAP_Membrane_Rel
biomodel name: FRAP_Cyt
biomodel name: FRAP_Cyt_Membrane_Binding
biomodel name: FRAP Condensate Droplet
biomodel-247511065
Name: “Bacillus Spore Membrane FRAP Analysis”
Saved: Mar 1, 2023
vcell identifier: biomodel-247511065
Owned by: “dfairchild”
Schaumburger et al., 2023
Dynamic model assuming mutually inhibitory biomarkers of frailty suggests bistability with contrasting mobility phenotypes.
Schaumburger N, Pally J, Moraru II, Kositsawat J, Kuchel GA, Blinov ML.
Frontiers in Network Physiology, 2023 May 4; 3, 1079070
PUBMED:37216041
doi: 10.3389/fnetp.2023.1079070
VCell BioModels referenced in publication
user: aging_project
biomodel name: Aging_Phenotypes
VCell is used in a research on aging
2023-05-04. The interdisciplinary team consisting of CCAM modelers Drs. Blinov and Moraru and researchers from the Center on Aging Drs. Kuchel and Kositsawat, together with former undergrad students Schaumburger and Pally published a manuscript theoretically explaining the bistability of clinical outcomes: the likelihood of an individual remaining mobile over time either increases to almost 100% or decreases to almost zero. The VCell software was extensively used for parameter scans and fitting.
Schaumburger, N., Pally, J., Moraru, […]
VCell 7.5 Release
2023-05-01. VCell 7.5 has been released. It features parameter estimation from the latest version of COPASI; model exchange via multiple standards, including, SBML, SEDML and OMEX; parameter scans in local client simulations; and hardening of unit handling including automatic unit transformations. Full specs available https://vcell.org/run-vcell-software.