Neves-Zaph et al., 2016

Cross-regulation of phosphodiesterase-1 and phosphodiesterase-2 activities controls dopaminemediated striatal alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (ampa) receptor trafficking.
Song, R.S., Tolentino, R., Sobie, E.A., Neves-Zaph, S.R.
J Biol Chem. 2016 Sep 7. pii: jbc.M116.749747
PUBMED:27605670      doi:10.1074/jbc.M116.749747

VCell BioModels referenced in publication:
user: rsong,   model name: RS_JBC2016

Oster et al., 2016

Paradoxical signaling regulates structural plasticity in dendritic spines
Rangamani, P., Levy, MG, Khan, S., Oster, G.
Proc Natl Acad Sci USA. 2016;113(36):E5298-307.
PUBMED:27551076      doi:10.1073/pnas.1610391113

VCell BioModels referenced in publication:
user: prangamani,   model name: Spine Model Final Rangamani et al PNAS 2016

Koh et al., 2016

Contributions of protein kinases and beta-arrestin to termination of protease-activated receptor 2 signaling
Jung, S. R., Seo, J. B., Deng, Y., Asbury, C. L., Hille, B., Koh, D. S.
J Gen Physiol. 2016;147(3):255-71.
PUBMED:26927499      doi:10.1085/jgp.201511477

VCell BioModels referenced in publication:
user: jsr007,   model name: hillelab: JungSR_PAR2_desensitization2015

Iglesias et al., 2016

Modeling Excitable Dynamics of Chemotactic Networks
Bhattacharya, S., Iglesias, P. A.
Methods Mol Biol. 2016;1407:397-415.
PUBMED:27271916      doi:10.1007/978-1-4939-3480-5_27

VCell BioModels referenced in publication:
user: sayak66,   model name: BEN
user: sayak66,   model name: Smoldyn

Clancy et al., 2016

A Computational Modeling and Simulation Approach to Investigate Mechanisms of Subcellular cAMP Compartmentation
Yang, P. C., Boras, B. W., Jeng, M. T., Docken, S. S., Lewis, T. J., McCulloch, A. D., Harvey, R. D., Clancy, C. E.
PLoS Comput Biol. 2016;12(7):e1005005.
PUBMED:27409243      doi:10.1371/journal.pcbi.1005005

VCell BioModels referenced in publication:
user: bboras,   model name: Boras-Diffusional Study-1000xPDEtest4
user: bboras,   model name: Boras-Diffusional Study-250xPDEtest4
user: bboras,   model name: Boras-Diffusional Study No geometry1x larger
user: bboras,   model name: Boras-Diffusional Study No geometry10x larger
user: bboras,   model name: Boras-Diffusional Study-25xPDEtest4
user: bboras,   model name: Boras-Diffusional Study-100xPDEtest7
user: bboras,   model name: Boras-Diffusional Study-10xPDEtest5
user: bboras,   model name: Boras-Diffusional Study-100xPDEtest5
user: bboras,   model name: Boras-Diffusional Study-100xPDEtest6 for images
user: bboras,   model name: Boras-Diffusional Study-1xPDEtest5

Panteleev et al., 2016

Hysteresis-like binding of coagulation factors X/Xa to procoagulant activated platelets and phospholipids results from multistep association and membrane-dependent multimerization
Podoplelova, N. A., Sveshnikova, A. N., Kurasawa, J. H., Sarafanov, A. G., Chambost, H., Vasil&apos, ev, S. A., Demina, I. A., Ataullakhanov, F. I., Alessi, M. C., Panteleev, M. A.
Biochim Biophys Acta. 2016;1858(6):1216-27.
PUBMED:26874201      doi:10.1016/j.bbamem.2016.02.008

VCell BioModels referenced in publication:
user: agolomy,   model name: fX_platelet_binding
user: agolomy,   model name: fX_thrombus_binding

Suh et al., 2016

Phosphoinositide 5- and 3-phosphatase activities of a voltage-sensing phosphatase in living cells show identical voltage dependence
Keum, D., Kruse, M., Kim, D. I., Hille, B., Suh, B. C.
Proc Natl Acad Sci USA. 2016;113(26):E3686-95.
PUBMED:27222577      doi:10.1073/pnas.1606472113

VCell BioModels referenced in publication:
user: hillelab,   model name: KeumKruseKimHilleSuh_2016

Hille et al., 2016

Dynamics of Phosphoinositide-Dependent Signaling in Sympathetic Neurons
Kruse, M., Vivas, O., Traynor-Kaplan, A., Hille, B.
J Neurosci. 2016;36(4):1386-400.
PUBMED:26818524      doi:10.1523/JNEUROSCI.3535-15.2016

VCell BioModels referenced in publication:
user: hillelab,   model name: KruseVivasTraynorKaplanHille_PI-metabolism_SCG_2015
user: hillelab,   model name: KruseVivasTraynorKaplanHille_PI-metabolism_SCG_2015

Philipson et al., 2016

Pancreatic Beta Cell G-Protein Coupled Receptors and Second Messenger Interactions: A Systems Biology Computational Analysis
Fridlyand, L. E., Philipson, L. H.
PLoS ONE. 2016;11(5):e0152869.
PUBMED:27138453      doi:10.1371/journal.pone.0152869

VCell MathModels referenced in publication:
user: Fridlyand,   model name: Messengers interaction

Dodge-Kafka et al., 2015

Analysis of AKAP7gamma Dimerization
Singh, A., Rigatti, M., Le, A. V., Carlson, C. R., Moraru,, II, Dodge-Kafka, K. L.
J Signal Transduct. 2015;2015:371626.
PUBMED:26417456      doi:10.1155/2015/371626

Tyson et al., 2015

From START to FINISH: computational analysis of cell cycle control in budding yeast
Kraikivski, Pavel, Chen, Katherine C., Laomettachit, Teeraphan, Murali, T. M., Tyson, John J.
npj Systems Biology and Applications 1 (2015) 15016
doi:10.1038/npjsba.2015.16

Ibrahim, B., 2015

Spindle assembly checkpoint is sufficient for complete Cdc20 sequestering in mitotic control
Ibrahim, B.
Comput Struct Biotechnol J. 2015;13:320-8.
PUBMED:25977749      doi:10.1016/j.csbj.2015.03.006

Zheng et al., 2015

Two functionally distinct sources of actin monomers supply the leading edge of lamellipodia
Vitriol, E. A., McMillen, L. M., Kapustina, M., Gomez, S. M., Vavylonis, D., Zheng, J. Q.
Cell Rep. 2015;11(3):433-45.
PUBMED:25865895      doi:10.1016/j.celrep.2015.03.033

VCell BioModels referenced in publication:
user: marynka,   model name: FDAP diffusion

Volynski et al., 2015

Calmodulin as a major calcium buffer shaping vesicular release and short-term synaptic plasticity: facilitation through buffer dislocation
Timofeeva, Y., Volynski, K. E.
Front Cell Neurosci. 2015;9:239.
PUBMED:26190970      doi:10.3389/fncel.2015.00239

Ibrahim, B., 2015

In silico spatial simulations reveal that MCC formation and excess BubR1 are required for tight inhibition of the anaphase-promoting complex
Ibrahim, B.
Mol Biosyst. 2015;11(11):2867-77.
PUBMED:26256776      doi:10.1039/c5mb00395d

McCulloch et al., 2015

Bridging scales through multiscale modeling: a case study on protein kinase A
Boras, B. W., Hirakis, S. P., Votapka, L. W., Malmstrom, R. D., Amaro, R. E., McCulloch, A. D.
Front Physiol. 2015;6:250.
PUBMED:26441670      doi:10.3389/fphys.2015.00250

Dodge-Kafka et al., 2015

Phosphorylation state-dependent interaction between AKAP7delta/gamma and phospholamban increases phospholamban phosphorylation
Rigatti, M., Le, A. V., Gerber, C., Moraru,, II, Dodge-Kafka, K. L.
Cellular Signaling, June 3rd 2015
PUBMED:26027516      doi:10.1016/j.cellsig.2015.05.016

VCell BioModels referenced in publication:
user: Marc.Rigatti,   model name: AKAP7_PLB_Binding_2PKA

Dekker et al., 2015

Symmetry and scale orient Min protein patterns in shaped bacterial sculptures
Wu, F., van Schie, B. G., Keymer, J. E., Dekker, C.
Nat Nanotechnol. 2015;10(8):719-26.
PUBMED:26098227      doi:10.1038/nnano.2015.126

Panteleev et al., 2015

Platelet surface-associated activation and secretion-mediated inhibition of coagulation factor XII
Zakharova, N. V., Artemenko, E. O., Podoplelova, N. A., Sveshnikova, A. N., Demina, I. A., Ataullakhanov, F. I., Panteleev, M. A.
Journal: PLoS ONE 10(2): e0116665. doi:10.1371/journal.pone.0116665 Publication Date: February 17, 2015
PUBMED:25688860      doi:10.1371/journal.pone.0116665

VCell BioModels referenced in publication:
user: agolomy,   model name: fXii_activation

Dittman et al., 2015

Synaptic activity regulates the abundance and binding of complexin
Wragg, R. T., Gouzer, G., Bai, J., Arianna, G., Ryan, T. A., Dittman, J. S.
Biophysical Journal, Volume 108, Issue 6, p1318-1329, 24 March 2015
PUBMED:25809246      doi:10.1016/j.bpj.2014.12.057

VCell BioModels referenced in publication:
user: jdittman,   model name: CPX Binding

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