Name: “Brown et al 2010 Purkinje MultiCompartmental Combined Biochem and Electrophysiol”
Saved: Sat, 12 Mar 2011  12:43:29 GMT
vcell identifier: biomodel-55174152
Owned by: “Brown”

download model (.vcml)

Compartments, Species, Reactions
  • Compartment "IO2sp".   (type: Volume)
    • Species "Ca_shell_IO2sp"
    • Species "Ca_IO2sp"
    • Species "ion_IO2sp"
    • Species "K_IO2sp"
    • Reaction "CalciumBuffering_SpinyDendrite1"   (∅ → Ca_shell_IO2sp)
  • Compartment "smooth distal dendrite long".   (type: Volume)
    • Species "Ca_shell_smooth_distal_dendrite_long"
    • Species "ion_smooth_distal_dendrite_long"
    • Species "K_smooth_distal_dendrite_long"
    • Species "Ca_smooth_distal_dendrite_long"
    • Reaction "CalciumBuffering_smooth_distal_dendrite_long"   (∅ → Ca_shell_smooth_distal_dendrite_long)
  • Compartment "IO1sm".   (type: Volume)
    • Species "ion_IO1sm"
    • Species "Ca_shell_IO1sm"
    • Species "K_IO1sm"
    • Species "Ca_IO1sm"
    • Reaction "CalciumBuffering_SmoothDendrite0"   (∅ → Ca_shell_IO1sm)
  • Compartment "IO2sm".   (type: Volume)
    • Species "Ca_shell_IO2sm"
    • Species "K_IO2sm"
    • Species "ion_IO2sm"
    • Species "Ca_IO2sm"
    • Reaction "CalciumBuffering_SpinyDendrite0"   (∅ → Ca_shell_IO2sm)
  • Compartment "ER_spine".   (type: Volume)
    • Species "Ca_ER_spine"
  • Compartment "IO4sm".   (type: Volume)
    • Species "Ca_IO4sm"
    • Species "K_IO4sm"
    • Species "ion_IO4sm"
    • Species "Ca_shell_IO4sm"
    • Reaction "CalciumBuffering_UC1"   (∅ → Ca_shell_IO4sm)
  • Compartment "adjacent dendrite".   (type: Volume)
    • Species "PABMg_adjacent_dendrite"
    • Species "CG_adjacent_dendrite"
    • Species "PABCa_adjacent_dendrite"
    • Species "Ca_shell_adjacent_dendrite"
    • Species "D28k_high_adjacent_dendrite"
    • Species "CGB_adjacent_dendrite"
    • Species "D28kB_adjacent_dendrite"
    • Species "K_adjacent_dendrite"
    • Species "Ca_adjacent_dendrite"
    • Species "D28k_adjacent_dendrite"
    • Species "Mg_adjacent_dendrite"
    • Species "PA_adjacent_dendrite"
    • Species "ion_adjacent_dendrite"
    • Species "D28kB_high_adjacent_dendrite"
    • Species "IP3_adjacent_dendrite"
    • Reaction "IP3deg_adjacent_dendrite"   (IP3_adjacent_dendrite → ∅)
    • Reaction "drive_pump_adjacent_dendrite"   (∅ → Ca_shell_adjacent_dendrite)
    • Reaction "D28kB_high_deg_adjacent_dendrite"   (D28kB_high_adjacent_dendrite → ∅)
    • Reaction "CG_binding_adjacent dendrite"   (Ca_adjacent_dendrite + CG_adjacent_dendrite → CGB_adjacent_dendrite)
    • Reaction "Ca_deg_adjacent_dendrite"   (Ca_adjacent_dendrite → ∅)
    • Reaction "PA_Ca_adjacent dendrite"   (PA_adjacent_dendrite + Ca_adjacent_dendrite → PABCa_adjacent_dendrite)
    • Reaction "CD28k_high_binding_adjacent dendrite"   (Ca_adjacent_dendrite + D28k_high_adjacent_dendrite → D28kB_high_adjacent_dendrite)
    • Reaction "D28k_high_deg_adjacent_dendrite"   (D28k_high_adjacent_dendrite → ∅)
    • Reaction "CGB_deg_adjacent_dendrite"   (CGB_adjacent_dendrite → ∅)
    • Reaction "IP3_degr2_adjacent_dendrite"   (IP3_adjacent_dendrite → ∅)
    • Reaction "PA_deg_adjacent_dendrite"   (PA_adjacent_dendrite → ∅)
    • Reaction "D28kB_deg_adjacent_dendrite"   (D28kB_adjacent_dendrite → ∅)
    • Reaction "CalciumBuffering_adjacent_dendrite"   (∅ → Ca_shell_adjacent_dendrite)
    • Reaction "CG_deg_adjacent_dendrite"   (CG_adjacent_dendrite → ∅)
    • Reaction "drive_channel_adjacent_dendrite"   (∅ → Ca_shell_adjacent_dendrite)
    • Reaction "CaD28k_med_adjacent dendrite"   (D28k_adjacent_dendrite + Ca_adjacent_dendrite → D28kB_adjacent_dendrite)
    • Reaction "PA_Mg_adjacent dendrite"   (PA_adjacent_dendrite + Mg_adjacent_dendrite → PABMg_adjacent_dendrite)
    • Reaction "D28k_deg_adjacent_dendrite"   (D28k_adjacent_dendrite → ∅)
    • Reaction "PABCa_deg_adjacent_dendrite"   (PABCa_adjacent_dendrite → ∅)
    • Reaction "PABMg_deg_adjacent_dendrite"   (PABMg_adjacent_dendrite → ∅)
  • Compartment "soma".   (type: Volume)
    • Species "Ca_shell_soma"
    • Species "Na_soma"
    • Species "IP3_soma"
    • Species "Ca_soma"
    • Species "ion_soma"
    • Species "K_soma"
    • Reaction "CalciumBuffering"   (∅ → Ca_shell_soma)
  • Compartment "main dendrite".   (type: Volume)
    • Species "K_main_dendrite"
    • Species "Ca_shell_main_dendrite"
    • Species "Ca_main_dendrite"
    • Species "IP3_main_dendrite"
    • Species "ion_main_dendrite"
    • Reaction "CalciumBuffering_main_dendrite"   (∅ → Ca_shell_main_dendrite)
  • Compartment "smooth distal dendrite short".   (type: Volume)
    • Species "K_smooth_distal_dendrite_short"
    • Species "ion_smooth_distal_dendrite_short"
    • Species "Ca_smooth_distal_dendrite_short"
    • Species "Ca_shell_smooth_distal_dendrite_short"
    • Species "IP3_smooth_distal_dendrite_short"
    • Reaction "CalciumBuffering_smooth_distal_dendrite"   (∅ → Ca_shell_smooth_distal_dendrite_short)
  • Compartment "IO3sm".   (type: Volume)
    • Species "ion_IO3sm"
    • Species "Ca_IO3sm"
    • Species "K_IO3sm"
    • Species "Ca_shell_IO3sm"
    • Reaction "CalciumBuffering_SpinyDendrite2"   (∅ → Ca_shell_IO3sm)
  • Compartment "spine".   (type: Volume)
    • Species "D28kB_spine"
    • Species "PABMg_spine"
    • Species "PABCa_spine"
    • Species "IP3_spine"
    • Species "PA_spine"
    • Species "ion_spine"
    • Species "CG_spine"
    • Species "Ca_shell_spine"
    • Species "Ca_spine"
    • Species "D28k_high_spine"
    • Species "CGB_spine"
    • Species "D28kB_high_spine"
    • Species "K_spine"
    • Species "D28k_spine"
    • Species "Mg_spine"
    • Reaction "IP3_degr"   (IP3_spine → ∅)
    • Reaction "PA_Ca"   (PA_spine + Ca_spine → PABCa_spine)
    • Reaction "drive_channel_spine"   (∅ → Ca_shell_spine)
    • Reaction "CD28k_high"   (D28k_high_spine + Ca_spine → D28kB_high_spine)
    • Reaction "PABMg_d"   (PABMg_spine → ∅)
    • Reaction "IP3_d"   (IP3_spine → ∅)
    • Reaction "pulses"   (∅ → IP3_spine)
    • Reaction "D28kB_d"   (D28kB_spine → ∅)
    • Reaction "drive_pump_spine"   (∅ → Ca_shell_spine)
    • Reaction "D28k_high_d"   (D28k_high_spine → ∅)
    • Reaction "CaD28k_med"   (D28k_spine + Ca_spine → D28kB_spine)
    • Reaction "D28kB_high_d"   (D28kB_high_spine → ∅)
    • Reaction "Ca_d"   (Ca_spine → ∅)
    • Reaction "D28k_d"   (D28k_spine → ∅)
    • Reaction "CGbinding"   (Ca_spine + CG_spine → CGB_spine)
    • Reaction "PA_Mg"   (PA_spine + Mg_spine → PABMg_spine)
    • Reaction "CG_d"   (CG_spine → ∅)
    • Reaction "PA_d"   (PA_spine → ∅)
    • Reaction "CGB_d"   (CGB_spine → ∅)
    • Reaction "PABCa_d"   (PABCa_spine → ∅)
    • Reaction "CalciumBuffering_spine"   (∅ → Ca_shell_spine)
  • Compartment "IO4sp".   (type: Volume)
    • Species "Ca_IO4sp"
    • Species "Ca_shell_IO4sp"
    • Species "K_IO4sp"
    • Species "ion_IO4sp"
    • Reaction "CalciumBuffering_UC1b1sm"   (∅ → Ca_shell_IO4sp)
  • Compartment "Extracellular".   (type: Volume)
    • Species "K_Extracellular"
    • Species "Ca_Extracellular"
    • Species "Ca_shell_Extracellular"
    • Species "ion_Extracellular"
    • Species "Ca_D_Extracellular"
    • Species "Na_Extracellular"
  • Compartment "IO3sp".   (type: Volume)
    • Species "K_IO3sp"
    • Species "ion_IO3sp"
    • Species "Ca_shell_IO3sp"
    • Species "Ca_IO3sp"
    • Reaction "CalciumBuffering_SpinyDendrite3"   (∅ → Ca_shell_IO3sp)
  • Compartment "IO5sp".   (type: Volume)
    • Species "Ca_IO5sp"
    • Species "Ca_shell_IO5sp"
    • Species "K_IO5sp"
    • Species "ion_IO5sp"
    • Reaction "CalciumBuffering_UC1b2sm"   (∅ → Ca_shell_IO5sp)
  • Compartment "spiny distal dendrite".   (type: Volume)
    • Species "Ca_shell_spiny_distal_dendrite"
    • Species "IP3_spiny_distal_dendrite"
    • Species "K_spiny_distal_dendrite"
    • Species "ion_spiny_distal_dendrite"
    • Species "Ca_spiny_distal_dendrite"
    • Reaction "CalciumBuffering_spiny_distal_dendrite"   (∅ → Ca_shell_spiny_distal_dendrite)
  • Compartment "IO6sp".   (type: Volume)
    • Species "Ca_shell_IO6sp"
    • Species "K_IO6sp"
    • Species "ion_IO6sp"
    • Species "Ca_IO6sp"
    • Reaction "CalciumBuffering_UC1b1sp"   (∅ → Ca_shell_IO6sp)
  • Compartment "ER_adjacent dendrite".   (type: Volume)
    • Species "Ca_ER_adjacent_dendrite"
  • Compartment "IO1sp".   (type: Volume)
    • Species "K_IO1sp"
    • Species "Ca_shell_IO1sp"
    • Species "ion_IO1sp"
    • Species "Ca_IO1sp"
    • Reaction "CalciumBuffering_SmoothDendrite1"   (∅ → Ca_shell_IO1sp)
  • Compartment "IO3spM".   (type: Membrane)
    • Species "hKA_IO3spM"
    • Species "zK23_IO3spM"
    • Species "mKM_IO3spM"
    • Species "mCaE_IO3spM"
    • Species "hKD_IO3spM"
    • Species "hCaE_IO3spM"
    • Species "mKD_IO3spM"
    • Species "mCaP2_IO3spM"
    • Species "mKhh_IO3spM"
    • Species "hCaT_IO3spM"
    • Species "mCaT_IO3spM"
    • Species "zKC3_IO3spM"
    • Species "mK23_IO3spM"
    • Species "mKA_IO3spM"
    • Species "mKC3_IO3spM"
    • Reaction "KAGate_h_IO3spM"   (∅ → hKA_IO3spM)
    • Reaction "KC3Gate_z_IO3spM"   (∅ → zKC3_IO3spM)
    • Reaction "KC3Gate_m_IO3spM"   (∅ → mKC3_IO3spM)
    • Reaction "CaP2Gate_m_IO3spM"   (∅ → mCaP2_IO3spM)
    • Reaction "CaTGate_m_IO3spM"   (∅ → mCaT_IO3spM)
    • Reaction "CaTGate_h_IO3spM"   (∅ → hCaT_IO3spM)
    • Reaction "CaEGate_m_IO3spM"   (∅ → mCaE_IO3spM)
    • Reaction "K23Gate_z_IO3spM"   (∅ → zK23_IO3spM)
    • Reaction "KhhGate_m_IO3spM"   (∅ → mKhh_IO3spM)
    • Reaction "KDGate_m_IO3spM"   (∅ → mKD_IO3spM)
    • Reaction "K23Gate_m_IO3spM"   (∅ → mK23_IO3spM)
    • Reaction "CaEGate_h_IO3spM"   (∅ → hCaE_IO3spM)
    • Reaction "KAGate_m_IO3spM"   (∅ → mKA_IO3spM)
    • Reaction "KDGate_h_IO3spM"   (∅ → hKD_IO3spM)
    • Reaction "KMGate_m_IO3spM"   (∅ → mKM_IO3spM)
    • Reaction "CaP2_IO3spM"   (Ca_Extracellular → Ca_IO3sp)
    • Reaction "CaE_IO3spM"   (Ca_Extracellular → Ca_IO3sp)
    • Reaction "I_from_IO3sm_to_IO3sp"   (ion_Extracellular → ion_IO3sp)
    • Reaction "KA_IO3spM"   (K_Extracellular → K_IO3sp)
    • Reaction "drive_pump_IO3spM"   (Ca_shell_Extracellular → Ca_shell_IO3sp)
    • Reaction "KD_IO3spM"   (K_Extracellular → K_IO3sp)
    • Reaction "CaT_IO3spM"   (Ca_Extracellular → Ca_IO3sp)
    • Reaction "drive_channel_IO3spM"   (Ca_shell_Extracellular → Ca_shell_IO3sp)
    • Reaction "KC3_IO3spM"   (K_Extracellular → K_IO3sp)
    • Reaction "Khh_IO3spM"   (K_Extracellular → K_IO3sp)
    • Reaction "Leak_IO3spM"   (ion_Extracellular → ion_IO3sp)
    • Reaction "KM_IO3spM"   (K_Extracellular → K_IO3sp)
    • Reaction "K23_IO3spM"   (K_Extracellular → K_IO3sp)
  • Compartment "IO6spM".   (type: Membrane)
    • Species "hKA_IO6spM"
    • Species "mKD_IO6spM"
    • Species "mKC3_IO6spM"
    • Species "mCaT_IO6spM"
    • Species "zK23_IO6spM"
    • Species "hCaT_IO6spM"
    • Species "hCaE_IO6spM"
    • Species "mCaE_IO6spM"
    • Species "mKhh_IO6spM"
    • Species "mCaP2_IO6spM"
    • Species "mKM_IO6spM"
    • Species "zKC3_IO6spM"
    • Species "mK23_IO6spM"
    • Species "hKD_IO6spM"
    • Species "mKA_IO6spM"
    • Reaction "CaEGate_m_IO6spM"   (∅ → mCaE_IO6spM)
    • Reaction "KDGate_h_IO6spM"   (∅ → hKD_IO6spM)
    • Reaction "K23Gate_z_IO6spM"   (∅ → zK23_IO6spM)
    • Reaction "KhhGate_m_IO6spM"   (∅ → mKhh_IO6spM)
    • Reaction "CaP2Gate_m_IO6spM"   (∅ → mCaP2_IO6spM)
    • Reaction "KAGate_h_IO6spM"   (∅ → hKA_IO6spM)
    • Reaction "CaEGate_h_IO6spM"   (∅ → hCaE_IO6spM)
    • Reaction "KC3Gate_z_IO6spM"   (∅ → zKC3_IO6spM)
    • Reaction "KC3Gate_m_IO6spM"   (∅ → mKC3_IO6spM)
    • Reaction "CaTGate_m_IO6spM"   (∅ → mCaT_IO6spM)
    • Reaction "KMGate_m_IO6spM"   (∅ → mKM_IO6spM)
    • Reaction "KDGate_m_IO6spM"   (∅ → mKD_IO6spM)
    • Reaction "KAGate_m_IO6spM"   (∅ → mKA_IO6spM)
    • Reaction "CaTGate_h_IO6spM"   (∅ → hCaT_IO6spM)
    • Reaction "K23Gate_m_IO6spM"   (∅ → mK23_IO6spM)
    • Reaction "CaT_IO6spM"   (Ca_Extracellular → Ca_IO6sp)
    • Reaction "K23_IO6spM"   (K_Extracellular → K_IO6sp)
    • Reaction "drive_pump_IO6spM"   (Ca_shell_Extracellular → Ca_shell_IO6sp)
    • Reaction "I_from_AdjDend_to_IO6sp"   (ion_Extracellular → ion_IO6sp)
    • Reaction "Leak_IO6spM"   (ion_Extracellular → ion_IO6sp)
    • Reaction "Khh_IO6spM"   (K_Extracellular → K_IO6sp)
    • Reaction "KC3_IO6spM"   (K_Extracellular → K_IO6sp)
    • Reaction "KD_IO6spM"   (K_Extracellular → K_IO6sp)
    • Reaction "KA_IO6spM"   (K_Extracellular → K_IO6sp)
    • Reaction "drive_channel_IO6spM"   (Ca_shell_Extracellular → Ca_shell_IO6sp)
    • Reaction "CaE_IO6spM"   (Ca_Extracellular → Ca_IO6sp)
    • Reaction "CaP2_IO6spM"   (Ca_Extracellular → Ca_IO6sp)
    • Reaction "KM_IO6spM"   (K_Extracellular → K_IO6sp)
  • Compartment "IO2smM".   (type: Membrane)
    • Species "mKM_IO2smM"
    • Species "mCaP2_IO2smM"
    • Species "mKD_IO2smM"
    • Species "hKD_IO2smM"
    • Species "mKC3_IO2smM"
    • Species "mKA_IO2smM"
    • Species "hCaE_IO2smM"
    • Species "mCaE_IO2smM"
    • Species "hKA_IO2smM"
    • Species "hCaT_IO2smM"
    • Species "mKhh_IO2smM"
    • Species "zKC3_IO2smM"
    • Species "mK23_IO2smM"
    • Species "zK23_IO2smM"
    • Species "mCaT_IO2smM"
    • Reaction "CaEGate_h_SpD0M"   (∅ → hCaE_IO2smM)
    • Reaction "KDGate_h_IO2smM"   (∅ → hKD_IO2smM)
    • Reaction "KAGate_h_IO2smM"   (∅ → hKA_IO2smM)
    • Reaction "KDGate_m_IO2smM"   (∅ → mKD_IO2smM)
    • Reaction "K23Gate_z_IO2smM"   (∅ → zK23_IO2smM)
    • Reaction "KhhGate_m_IO2smM"   (∅ → mKhh_IO2smM)
    • Reaction "CaTGate_h_IO2smM"   (∅ → hCaT_IO2smM)
    • Reaction "CaTGate_m_IO2smM"   (∅ → mCaT_IO2smM)
    • Reaction "KMGate_m_IO2smM"   (∅ → mKM_IO2smM)
    • Reaction "KC3Gate_m_IO2smM"   (∅ → mKC3_IO2smM)
    • Reaction "CaP2Gate_m_IO2smM"   (∅ → mCaP2_IO2smM)
    • Reaction "CaEGate_m_IO2smM"   (∅ → mCaE_IO2smM)
    • Reaction "K23Gate_m_IO2smM"   (∅ → mK23_IO2smM)
    • Reaction "KAGate_m_IO2smM"   (∅ → mKA_IO2smM)
    • Reaction "KC3Gate_z_IO2smM"   (∅ → zKC3_IO2smM)
    • Reaction "KD_IO2smM"   (K_Extracellular → K_IO2sm)
    • Reaction "drive_pump_IO2smM"   (Ca_shell_Extracellular → Ca_shell_IO2sm)
    • Reaction "Khh_IO2smM"   (K_Extracellular → K_IO2sm)
    • Reaction "CaE_IO2smM"   (Ca_Extracellular → Ca_IO2sm)
    • Reaction "CaT_IO2smM"   (Ca_Extracellular → Ca_IO2sm)
    • Reaction "I_from_BranchIO1sm_to_IO2sm"   (ion_Extracellular → ion_IO2sm)
    • Reaction "KM_IO2smM"   (K_Extracellular → K_IO2sm)
    • Reaction "CaP2_IO2smM"   (Ca_Extracellular → Ca_IO2sm)
    • Reaction "Leak_IO2smM"   (ion_Extracellular → ion_IO2sm)
    • Reaction "KC3_IO2smM"   (K_Extracellular → K_IO2sm)
    • Reaction "K23_IO2smM"   (K_Extracellular → K_IO2sm)
    • Reaction "drive_channel_IO2smM"   (Ca_shell_Extracellular → Ca_shell_IO2sm)
    • Reaction "KA_IO2smM"   (K_Extracellular → K_IO2sm)
    • Reaction "I_from_IO2sp_to_IO2sm"   (ion_Extracellular → ion_IO2sm)
  • Compartment "smDshortM".   (type: Membrane)
    • Species "zKC3_smDshortM"
    • Species "mCaP2_smDshortM"
    • Species "mKA_smDshortM"
    • Species "mKM_smDshortM"
    • Species "hKD_smDshortM"
    • Species "mKD_smDshortM"
    • Species "mCaT_smDshortM"
    • Species "mKhh_smDshortM"
    • Species "hKA_smDshortM"
    • Species "mKC3_smDshortM"
    • Species "hCaE_smDshortM"
    • Species "mCaE_smDshortM"
    • Species "zK23_smDshortM"
    • Species "mK23_smDshortM"
    • Species "hCaT_smDshortM"
    • Reaction "KC3Gate_m_smoothdistdenshort"   (∅ → mKC3_smDshortM)
    • Reaction "CaP2Gate_m_smoothdistdenshort"   (∅ → mCaP2_smDshortM)
    • Reaction "CaEGate_m_smoothdistdenshort"   (∅ → mCaE_smDshortM)
    • Reaction "CaTGate_h_smoothdistdenshort"   (∅ → hCaT_smDshortM)
    • Reaction "K23Gate_m_smoothdistdenshort"   (∅ → mK23_smDshortM)
    • Reaction "CaTGate_m_smoothdistdenshort"   (∅ → mCaT_smDshortM)
    • Reaction "KhhGate_m_smoothdistdenshort"   (∅ → mKhh_smDshortM)
    • Reaction "KAGate_m_smoothdistdenshort"   (∅ → mKA_smDshortM)
    • Reaction "KMGate_m_smoothdistdenshort"   (∅ → mKM_smDshortM)
    • Reaction "KDGate_m_smoothdistdenshort"   (∅ → mKD_smDshortM)
    • Reaction "KAGate_h_smoothdistdenshort"   (∅ → hKA_smDshortM)
    • Reaction "KC3Gate_z_smoothdistdenshort"   (∅ → zKC3_smDshortM)
    • Reaction "K23Gate_z_smoothdistdenshort"   (∅ → zK23_smDshortM)
    • Reaction "CaEGate_h_smoothdistdenshort"   (∅ → hCaE_smDshortM)
    • Reaction "KDGate_h_smoothdistdenshort"   (∅ → hKD_smDshortM)
    • Reaction "CaE_smoothdistdenshort"   (Ca_Extracellular → Ca_smooth_distal_dendrite_short)
    • Reaction "CaT_smoothdistdenshort"   (Ca_Extracellular → Ca_smooth_distal_dendrite_short)
    • Reaction "KD_smoothdistdenshort"   (K_Extracellular → K_smooth_distal_dendrite_short)
    • Reaction "KM_smoothdistdenshort"   (K_Extracellular → K_smooth_distal_dendrite_short)
    • Reaction "KA_smoothdistdenshort"   (K_Extracellular → K_smooth_distal_dendrite_short)
    • Reaction "KC3_smoothdistdenshort"   (K_Extracellular → K_smooth_distal_dendrite_short)
    • Reaction "drive_channel_smDshortM"   (Ca_shell_Extracellular → Ca_shell_smooth_distal_dendrite_short)
    • Reaction "Leak_smoothdistdenshort"   (ion_Extracellular → ion_smooth_distal_dendrite_short)
    • Reaction "Khh_smoothdistdenshort"   (K_Extracellular → K_smooth_distal_dendrite_short)
    • Reaction "drive_pump_smDshortM"   (Ca_shell_Extracellular → Ca_shell_smooth_distal_dendrite_short)
    • Reaction "K23_smoothdistdenshort"   (K_Extracellular → K_smooth_distal_dendrite_short)
    • Reaction "I_from_IO3sm_and_smlong_to_smooth_distal_dendrite_short"   (ion_Extracellular → ion_smooth_distal_dendrite_short)
    • Reaction "CaP2_smoothdistdenshort"   (Ca_Extracellular → Ca_smooth_distal_dendrite_short)
    • Reaction "I_from_BranchMainDend_to_smooth_distal_dendrite_short"   (ion_Extracellular → ion_smooth_distal_dendrite_short)
  • Compartment "AM".   (type: Membrane)
    • Species "mCaE_AM"
    • Species "mCaT_AM"
    • Species "zKC3_AM"
    • Species "mK23_AM"
    • Species "mKA_AM"
    • Species "mKhh_AM"
    • Species "hCaE_AM"
    • Species "hCaT_AM"
    • Species "zK23_AM"
    • Species "mKC3_AM"
    • Species "mKM_AM"
    • Species "hKA_AM"
    • Species "hKD_AM"
    • Species "mKD_AM"
    • Species "mCaP2_AM"
    • Reaction "KC3Gate_z_adjden"   (∅ → zKC3_AM)
    • Reaction "KC3Gate_m_adjden"   (∅ → mKC3_AM)
    • Reaction "CaTGate_m_adjden"   (∅ → mCaT_AM)
    • Reaction "KDGate_m_adjden"   (∅ → mKD_AM)
    • Reaction "KhhGate_m_adjden"   (∅ → mKhh_AM)
    • Reaction "CaEGate_h_adjden"   (∅ → hCaE_AM)
    • Reaction "K23Gate_z_adjden"   (∅ → zK23_AM)
    • Reaction "CaEGate_m_adjden"   (∅ → mCaE_AM)
    • Reaction "K23Gate_m_adjden"   (∅ → mK23_AM)
    • Reaction "CaTGate_h_adjden"   (∅ → hCaT_AM)
    • Reaction "KMGate_m_adjden"   (∅ → mKM_AM)
    • Reaction "KAGate_h_adjden"   (∅ → hKA_AM)
    • Reaction "KDGate_h_adjden"   (∅ → hKD_AM)
    • Reaction "CaP2Gate_m_adjden"   (∅ → mCaP2_AM)
    • Reaction "KAGate_m_adjden"   (∅ → mKA_AM)
    • Reaction "I_from_IO6spM_and_spine_to_adjacent_dendrite"   (ion_Extracellular → ion_adjacent_dendrite)
    • Reaction "CF-induced Ca influx_adjacent dendrite"   (Ca_Extracellular → Ca_adjacent_dendrite)
    • Reaction "I_from_SpinyDistDend_to_adjacent_dendrite"   (ion_Extracellular → ion_adjacent_dendrite)
    • Reaction "CaE_adjden"   (Ca_Extracellular → Ca_adjacent_dendrite)
    • Reaction "KA_adjden"   (K_Extracellular → K_adjacent_dendrite)
    • Reaction "Leak_adjden"   (ion_Extracellular → ion_adjacent_dendrite)
    • Reaction "K23_adjden"   (K_Extracellular → K_adjacent_dendrite)
    • Reaction "KC3_adjden"   (K_Extracellular → K_adjacent_dendrite)
    • Reaction "CaP2_adjden"   (Ca_Extracellular → Ca_adjacent_dendrite)
    • Reaction "CaT_adjden"   (Ca_Extracellular → Ca_adjacent_dendrite)
    • Reaction "KD_adjden"   (K_Extracellular → K_adjacent_dendrite)
    • Reaction "Khh_adjden"   (K_Extracellular → K_adjacent_dendrite)
    • Reaction "KM_adjden"   (K_Extracellular → K_adjacent_dendrite)
  • Compartment "PM".   (type: Membrane)
    • Species "mNaP_PM"
    • Species "mKhh_PM"
    • Species "mKh_PM"
    • Species "hKA_PM"
    • Species "mNaF_PM"
    • Species "mKM_PM"
    • Species "mKA_PM"
    • Species "hNaF_PM"
    • Species "mCaP2_PM"
    • Reaction "CaP2Gate_m_soma"   (∅ → mCaP2_PM)
    • Reaction "NaPGate_m_soma"   (∅ → mNaP_PM)
    • Reaction "KMGate_m_soma"   (∅ → mKM_PM)
    • Reaction "NaFGateh_h_soma"   (∅ → hNaF_PM)
    • Reaction "KhGate_m_soma"   (∅ → mKh_PM)
    • Reaction "KhhGate_m_soma"   (∅ → mKhh_PM)
    • Reaction "KAGate_h_soma"   (∅ → hKA_PM)
    • Reaction "KAGate_m_soma"   (∅ → mKA_PM)
    • Reaction "NaFGate_m_soma"   (∅ → mNaF_PM)
    • Reaction "NaP_soma"   (Na_Extracellular → Na_soma)
    • Reaction "drive_pump_PM"   (Ca_shell_Extracellular → Ca_shell_soma)
    • Reaction "drive_channel_PM"   (Ca_shell_Extracellular → Ca_shell_soma)
    • Reaction "NaF_soma"   (Na_Extracellular → Na_soma)
    • Reaction "KA_soma"   (K_Extracellular → K_soma)
    • Reaction "KM_soma"   (K_Extracellular → K_soma)
    • Reaction "CaP2_soma"   (Ca_Extracellular → Ca_soma)
    • Reaction "Kh_soma"   (K_Extracellular → K_soma)
    • Reaction "I_from_Main_Dendrite_to_soma"   (ion_Extracellular → ion_soma)
    • Reaction "Khh_soma"   (K_Extracellular → K_soma)
    • Reaction "Leak_soma"   (ion_Extracellular → ion_soma)
  • Compartment "spDM".   (type: Membrane)
    • Species "hKD_spDM"
    • Species "mKA_spDM"
    • Species "hCaE_spDM"
    • Species "mCaP2_spDM"
    • Species "mKC3_spDM"
    • Species "zKC3_spDM"
    • Species "mCaT_spDM"
    • Species "mCaE_spDM"
    • Species "mKM_spDM"
    • Species "mKhh_spDM"
    • Species "zK23_spDM"
    • Species "mK23_spDM"
    • Species "hKA_spDM"
    • Species "hCaT_spDM"
    • Species "mKD_spDM"
    • Reaction "CaEGate_h_spinydistden"   (∅ → hCaE_spDM)
    • Reaction "KAGate_h_spinydistden"   (∅ → hKA_spDM)
    • Reaction "KMGate_m_spinydistden"   (∅ → mKM_spDM)
    • Reaction "KC3Gate_m_spinydistden"   (∅ → mKC3_spDM)
    • Reaction "K23Gate_z_spinydistden"   (∅ → zK23_spDM)
    • Reaction "KDGate_m_spinydistden"   (∅ → mKD_spDM)
    • Reaction "KC3Gate_z_spinydistden"   (∅ → zKC3_spDM)
    • Reaction "CaTGate_m_spinydistden"   (∅ → mCaT_spDM)
    • Reaction "CaP2Gate_m_spinydistden"   (∅ → mCaP2_spDM)
    • Reaction "CaTGate_h_spinydistden"   (∅ → hCaT_spDM)
    • Reaction "KhhGate_m_spinydistden"   (∅ → mKhh_spDM)
    • Reaction "KDGate_h_spinydistden"   (∅ → hKD_spDM)
    • Reaction "CaEGate_m_spinydistden"   (∅ → mCaE_spDM)
    • Reaction "K23Gate_m_spinydistden"   (∅ → mK23_spDM)
    • Reaction "KAGate_m_spinydistden"   (∅ → mKA_spDM)
    • Reaction "CaE_spinydistden"   (Ca_Extracellular → Ca_spiny_distal_dendrite)
    • Reaction "Khh_spinydistden"   (K_Extracellular → K_spiny_distal_dendrite)
    • Reaction "KM_spinydistden"   (K_Extracellular → K_spiny_distal_dendrite)
    • Reaction "CaT_spinydistden"   (Ca_Extracellular → Ca_spiny_distal_dendrite)
    • Reaction "KA_spinydistden"   (K_Extracellular → K_spiny_distal_dendrite)
    • Reaction "KD_spinydistden"   (K_Extracellular → K_spiny_distal_dendrite)
    • Reaction "K23_spinydistden"   (K_Extracellular → K_spiny_distal_dendrite)
    • Reaction "Leak_spinydistden"   (ion_Extracellular → ion_spiny_distal_dendrite)
    • Reaction "drive_pump_spDM"   (Ca_shell_Extracellular → Ca_shell_spiny_distal_dendrite)
    • Reaction "CaP2_spinydistden"   (Ca_Extracellular → Ca_spiny_distal_dendrite)
    • Reaction "drive_channel_spDM"   (Ca_shell_Extracellular → Ca_shell_spiny_distal_dendrite)
    • Reaction "KC3_spinydistden"   (K_Extracellular → K_spiny_distal_dendrite)
    • Reaction "I_from_SmoothDistDendLong_to_spiny_distal_dendrite"   (ion_Extracellular → ion_spiny_distal_dendrite)
    • Reaction "I_from_IO5spM_and_adjden_to_spiny_distal_dendrite"   (ion_Extracellular → ion_spiny_distal_dendrite)
  • Compartment "IO1smM".   (type: Membrane)
    • Species "mKA_IO1smM"
    • Species "hKA_IO1smM"
    • Species "mKhh_IO1smM"
    • Species "mKC3_IO1smM"
    • Species "mCaE_IO1smM"
    • Species "zK23_IO1smM"
    • Species "mCaP2_IO1smM"
    • Species "mCaT_IO1smM"
    • Species "hCaT_IO1smM"
    • Species "hCaE_IO1smM"
    • Species "mKM_IO1smM"
    • Species "mK23_IO1smM"
    • Species "mKD_IO1smM"
    • Species "hKD_IO1smM"
    • Species "zKC3_IO1smM"
    • Reaction "CaEGate_m_IO1smM"   (∅ → mCaE_IO1smM)
    • Reaction "KDGate_h_IO1smM"   (∅ → hKD_IO1smM)
    • Reaction "CaEGate_h_IO1smM"   (∅ → hCaE_IO1smM)
    • Reaction "KC3Gate_m_IO1smM"   (∅ → mKC3_IO1smM)
    • Reaction "CaP2Gate_m_IO1smM"   (∅ → mCaP2_IO1smM)
    • Reaction "KMGate_m_IO1smM"   (∅ → mKM_IO1smM)
    • Reaction "KhhGate_m_IO1smM"   (∅ → mKhh_IO1smM)
    • Reaction "CaTGate_h_IO1smM"   (∅ → hCaT_IO1smM)
    • Reaction "KAGate_m_IO1smM"   (∅ → mKA_IO1smM)
    • Reaction "KDGate_m_IO1smM"   (∅ → mKD_IO1smM)
    • Reaction "KC3Gate_z_IO1smM"   (∅ → zKC3_IO1smM)
    • Reaction "KAGate_h_IO1smM"   (∅ → hKA_IO1smM)
    • Reaction "K23Gate_z_IO1smM"   (∅ → zK23_IO1smM)
    • Reaction "CaTGate_m_IO1smM"   (∅ → mCaT_IO1smM)
    • Reaction "K23Gate_m_IO1smM"   (∅ → mK23_IO1smM)
    • Reaction "K23_IO1smM"   (K_Extracellular → K_IO1sm)
    • Reaction "I_from_BranchIO1sm_to_IO1sm"   (ion_Extracellular → ion_IO1sm)
    • Reaction "CaT_IO1smM"   (Ca_Extracellular → Ca_IO1sm)
    • Reaction "CaP2_IO1smM"   (Ca_Extracellular → Ca_IO1sm)
    • Reaction "Khh_IO1smM"   (K_Extracellular → K_IO1sm)
    • Reaction "drive_pump_IO1smM"   (Ca_shell_Extracellular → Ca_shell_IO1sm)
    • Reaction "drive_channel_IO1smM"   (Ca_shell_Extracellular → Ca_shell_IO1sm)
    • Reaction "CaE_IO1smM"   (Ca_Extracellular → Ca_IO1sm)
    • Reaction "KM_IO1smM"   (K_Extracellular → K_IO1sm)
    • Reaction "Leak_IO1smM"   (ion_Extracellular → ion_IO1sm)
    • Reaction "KC3_IO1smM"   (K_Extracellular → K_IO1sm)
    • Reaction "I_from_BranchMainDend_to_IO1sm"   (ion_Extracellular → ion_IO1sm)
    • Reaction "KA_IO1smM"   (K_Extracellular → K_IO1sm)
    • Reaction "KD_IO1smM"   (K_Extracellular → K_IO1sm)
  • Compartment "IO2spM".   (type: Membrane)
    • Species "hKD_IO2spM"
    • Species "mCaE_IO2spM"
    • Species "mCaT_IO2spM"
    • Species "hCaT_IO2spM"
    • Species "hCaE_IO2spM"
    • Species "hKA_IO2spM"
    • Species "mKM_IO2spM"
    • Species "mCaP2_IO2spM"
    • Species "mKC3_IO2spM"
    • Species "mKD_IO2spM"
    • Species "zKC3_IO2spM"
    • Species "mKhh_IO2spM"
    • Species "mKA_IO2spM"
    • Species "mK23_IO2spM"
    • Species "zK23_IO2spM"
    • Reaction "CaEGate_h_IO2spM"   (∅ → hCaE_IO2spM)
    • Reaction "KhhGate_m_IO2spM"   (∅ → mKhh_IO2spM)
    • Reaction "KAGate_h_IO2spM"   (∅ → hKA_IO2spM)
    • Reaction "KC3Gate_m_IO2spM"   (∅ → mKC3_IO2spM)
    • Reaction "K23Gate_z_IO2spM"   (∅ → zK23_IO2spM)
    • Reaction "KAGate_m_IO2spM"   (∅ → mKA_IO2spM)
    • Reaction "CaEGate_m_IO2spM"   (∅ → mCaE_IO2spM)
    • Reaction "CaP2Gate_m_IO2spM"   (∅ → mCaP2_IO2spM)
    • Reaction "KDGate_m_IO2spM"   (∅ → mKD_IO2spM)
    • Reaction "KDGate_h_IO2spM"   (∅ → hKD_IO2spM)
    • Reaction "CaTGate_m_IO2spM"   (∅ → mCaT_IO2spM)
    • Reaction "KC3Gate_z_IO2spM"   (∅ → zKC3_IO2spM)
    • Reaction "CaTGate_h_IO2spM"   (∅ → hCaT_IO2spM)
    • Reaction "K23Gate_m_IO2spM"   (∅ → mK23_IO2spM)
    • Reaction "KMGate_m_IO2spM"   (∅ → mKM_IO2spM)
    • Reaction "KD_IO2spM"   (K_Extracellular → K_IO2sp)
    • Reaction "CaE_IO2spM"   (Ca_Extracellular → Ca_IO2sp)
    • Reaction "I_from_IO2sm_to_IO2sp"   (ion_Extracellular → ion_IO2sp)
    • Reaction "drive_pump_IO2spM"   (Ca_shell_Extracellular → Ca_shell_IO2sp)
    • Reaction "Khh_IO2spM"   (K_Extracellular → K_IO2sp)
    • Reaction "KM_IO2spM"   (K_Extracellular → K_IO2sp)
    • Reaction "Leak_IO2spM"   (ion_Extracellular → ion_IO2sp)
    • Reaction "CaP2_IO2spM"   (Ca_Extracellular → Ca_IO2sp)
    • Reaction "KA_IO2spM"   (K_Extracellular → K_IO2sp)
    • Reaction "CaT_IO2spM"   (Ca_Extracellular → Ca_IO2sp)
    • Reaction "drive_channel_IO2spM"   (Ca_shell_Extracellular → Ca_shell_IO2sp)
    • Reaction "K23_IO2spM"   (K_Extracellular → K_IO2sp)
    • Reaction "KC3_IO2spM"   (K_Extracellular → K_IO2sp)
  • Compartment "IO4smM".   (type: Membrane)
    • Species "mKC3_IO4smM"
    • Species "hKD_IO4smM"
    • Species "hKA_IO4smM"
    • Species "mCaP2_IO4smM"
    • Species "mCaE_IO4smM"
    • Species "zKC3_IO4smM"
    • Species "mKA_IO4smM"
    • Species "mKhh_IO4smM"
    • Species "mCaT_IO4smM"
    • Species "zK23_IO4smM"
    • Species "mKD_IO4smM"
    • Species "mKM_IO4smM"
    • Species "hCaE_IO4smM"
    • Species "hCaT_IO4smM"
    • Species "mK23_IO4smM"
    • Reaction "KC3Gate_m_IO4smM"   (∅ → mKC3_IO4smM)
    • Reaction "CaTGate_h_IO4smM"   (∅ → hCaT_IO4smM)
    • Reaction "KDGate_h_IO4smM"   (∅ → hKD_IO4smM)
    • Reaction "CaP2Gate_m_IO4smM"   (∅ → mCaP2_IO4smM)
    • Reaction "KC3Gate_z_IO4smM"   (∅ → zKC3_IO4smM)
    • Reaction "KDGate_m_IO4smM"   (∅ → mKD_IO4smM)
    • Reaction "KAGate_m_IO4smM"   (∅ → mKA_IO4smM)
    • Reaction "CaEGate_m_IO4smM"   (∅ → mCaE_IO4smM)
    • Reaction "CaTGate_m_IO4smM"   (∅ → mCaT_IO4smM)
    • Reaction "K23Gate_m_IO4smM"   (∅ → mK23_IO4smM)
    • Reaction "KMGate_m_IO4smM"   (∅ → mKM_IO4smM)
    • Reaction "CaEGate_h_IO4smM"   (∅ → hCaE_IO4smM)
    • Reaction "K23Gate_z_IO4smM"   (∅ → zK23_IO4smM)
    • Reaction "KhhGate_m_IO4smM"   (∅ → mKhh_IO4smM)
    • Reaction "KAGate_h_IO4smM"   (∅ → hKA_IO4smM)
    • Reaction "Khh_IO4smM"   (K_Extracellular → K_IO4sm)
    • Reaction "drive_pump_IO4smM"   (Ca_shell_Extracellular → Ca_shell_IO4sm)
    • Reaction "Leak_IO4smM"   (ion_Extracellular → ion_IO4sm)
    • Reaction "K23_IO4smM"   (K_Extracellular → K_IO4sm)
    • Reaction "KM_IO4smM"   (K_Extracellular → K_IO4sm)
    • Reaction "KA_IO4smM"   (K_Extracellular → K_IO4sm)
    • Reaction "I_from_IO4sp_to_IO4sm"   (ion_Extracellular → ion_IO4sm)
    • Reaction "drive_channel_IO4smM"   (Ca_shell_Extracellular → Ca_shell_IO4sm)
    • Reaction "CaE_IO4smM"   (Ca_Extracellular → Ca_IO4sm)
    • Reaction "KD_IO4smM"   (K_Extracellular → K_IO4sm)
    • Reaction "KC3_IO4smM"   (K_Extracellular → K_IO4sm)
    • Reaction "CaP2_IO4smM"   (Ca_Extracellular → Ca_IO4sm)
    • Reaction "I_from_SmoothDistDendLong_to_IO4sm"   (ion_Extracellular → ion_IO4sm)
    • Reaction "CaT_IO4smM"   (Ca_Extracellular → Ca_IO4sm)
  • Compartment "IO4spM".   (type: Membrane)
    • Species "mK23_IO4spM"
    • Species "hCaT_IO4spM"
    • Species "hCaE_IO4spM"
    • Species "mKM_IO4spM"
    • Species "mKA_IO4spM"
    • Species "mKD_IO4spM"
    • Species "mCaT_IO4spM"
    • Species "mCaE_IO4spM"
    • Species "hKA_IO4spM"
    • Species "mKhh_IO4spM"
    • Species "hKD_IO4spM"
    • Species "mKC3_IO4spM"
    • Species "zKC3_IO4spM"
    • Species "zK23_IO4spM"
    • Species "mCaP2_IO4spM"
    • Reaction "KAGate_m_IO4spM"   (∅ → mKA_IO4spM)
    • Reaction "KDGate_h_IO4spM"   (∅ → hKD_IO4spM)
    • Reaction "KAGate_h_IO4spM"   (∅ → hKA_IO4spM)
    • Reaction "CaEGate_m_IO4spM"   (∅ → mCaE_IO4spM)
    • Reaction "KDGate_m_IO4spM"   (∅ → mKD_IO4spM)
    • Reaction "KC3Gate_z_IO4spM"   (∅ → zKC3_IO4spM)
    • Reaction "KC3Gate_m_IO4spM"   (∅ → mKC3_IO4spM)
    • Reaction "CaTGate_h_IO4spM"   (∅ → hCaT_IO4spM)
    • Reaction "CaTGate_m_IO4spM"   (∅ → mCaT_IO4spM)
    • Reaction "K23Gate_m_IO4spM"   (∅ → mK23_IO4spM)
    • Reaction "K23Gate_z_IO4spM"   (∅ → zK23_IO4spM)
    • Reaction "CaEGate_h_IO4spM"   (∅ → hCaE_IO4spM)
    • Reaction "CaP2Gate_m_IO4spM"   (∅ → mCaP2_IO4spM)
    • Reaction "KhhGate_m_IO4spM"   (∅ → mKhh_IO4spM)
    • Reaction "KMGate_m_IO4spM"   (∅ → mKM_IO4spM)
    • Reaction "CaP2_IO4spM"   (Ca_Extracellular → Ca_IO4sp)
    • Reaction "K23_IO4spM"   (K_Extracellular → K_IO4sp)
    • Reaction "KM_IO4spM"   (K_Extracellular → K_IO4sp)
    • Reaction "CaE_IO4spM"   (Ca_Extracellular → Ca_IO4sp)
    • Reaction "Leak_IO4spM"   (ion_Extracellular → ion_IO4sp)
    • Reaction "Khh_IO4spM"   (K_Extracellular → K_IO4sp)
    • Reaction "I_from_IO4sm_to_IO4sp"   (ion_Extracellular → ion_IO4sp)
    • Reaction "drive_pump_IO4spM"   (Ca_shell_Extracellular → Ca_shell_IO4sp)
    • Reaction "KA_IO4spM"   (K_Extracellular → K_IO4sp)
    • Reaction "drive_channel_IO4spM"   (Ca_shell_Extracellular → Ca_shell_IO4sp)
    • Reaction "KD_IO4spM"   (K_Extracellular → K_IO4sp)
    • Reaction "KC3_IO4spM"   (K_Extracellular → K_IO4sp)
    • Reaction "CaT_IO4spM"   (Ca_Extracellular → Ca_IO4sp)
  • Compartment "IO5spM".   (type: Membrane)
    • Species "mKhh_IO5spM"
    • Species "mCaE_IO5spM"
    • Species "hCaE_IO5spM"
    • Species "mCaT_IO5spM"
    • Species "hCaT_IO5spM"
    • Species "hKD_IO5spM"
    • Species "mKD_IO5spM"
    • Species "zKC3_IO5spM"
    • Species "mKC3_IO5spM"
    • Species "mKM_IO5spM"
    • Species "zK23_IO5spM"
    • Species "mKA_IO5spM"
    • Species "mCaP2_IO5spM"
    • Species "hKA_IO5spM"
    • Species "mK23_IO5spM"
    • Reaction "KhhGate_m_IO5spM"   (∅ → mKhh_IO5spM)
    • Reaction "CaEGate_h_IO5spM"   (∅ → hCaE_IO5spM)
    • Reaction "KC3Gate_z_IO5spM"   (∅ → zKC3_IO5spM)
    • Reaction "KC3Gate_m_IO5spM"   (∅ → mKC3_IO5spM)
    • Reaction "CaTGate_h_IO5spM"   (∅ → hCaT_IO5spM)
    • Reaction "K23Gate_m_IO5spM"   (∅ → mK23_IO5spM)
    • Reaction "CaTGate_m_IO5spM"   (∅ → mCaT_IO5spM)
    • Reaction "K23Gate_z_IO5spM"   (∅ → zK23_IO5spM)
    • Reaction "CaEGate_m_IO5spM"   (∅ → mCaE_IO5spM)
    • Reaction "KDGate_m_IO5spM"   (∅ → mKD_IO5spM)
    • Reaction "CaP2Gate_m_IO5spM"   (∅ → mCaP2_IO5spM)
    • Reaction "KAGate_m_IO5spM"   (∅ → mKA_IO5spM)
    • Reaction "KAGate_h_IO5spM"   (∅ → hKA_IO5spM)
    • Reaction "KMGate_m_IO5spM"   (∅ → mKM_IO5spM)
    • Reaction "KDGate_h_IO5spM"   (∅ → hKD_IO5spM)
    • Reaction "CaT_IO5spM"   (Ca_Extracellular → Ca_IO5sp)
    • Reaction "KC3_IO5spM"   (K_Extracellular → K_IO5sp)
    • Reaction "KA_IO5spM"   (K_Extracellular → K_IO5sp)
    • Reaction "Khh_IO5spM"   (K_Extracellular → K_IO5sp)
    • Reaction "K23_IO5spM"   (K_Extracellular → K_IO5sp)
    • Reaction "drive_pump_IO5spM"   (Ca_shell_Extracellular → Ca_shell_IO5sp)
    • Reaction "Leak_IO5spM"   (ion_Extracellular → ion_IO5sp)
    • Reaction "KD_IO5spM"   (K_Extracellular → K_IO5sp)
    • Reaction "drive_channel_IO5spM"   (Ca_shell_Extracellular → Ca_shell_IO5sp)
    • Reaction "KM_IO5spM"   (K_Extracellular → K_IO5sp)
    • Reaction "I_from_SpinyDistDend_to_IO5sp"   (ion_Extracellular → ion_IO5sp)
    • Reaction "CaE_IO5spM"   (Ca_Extracellular → Ca_IO5sp)
    • Reaction "CaP2_IO5spM"   (Ca_Extracellular → Ca_IO5sp)
  • Compartment "ER_AM".   (type: Membrane)
    • Species "h_D_ER_AM"
    • Species "ERDensity_D_ER_AM"
    • Reaction "reaction1"   (h_D_ER_AM → ∅)
    • Reaction "IP3R_fluxD"   (Ca_adjacent_dendrite → Ca_ER_adjacent_dendrite)
    • Reaction "SERCA_fluxD"   (Ca_adjacent_dendrite → Ca_ER_adjacent_dendrite)
    • Reaction "ER_leak_fluxD"   (Ca_adjacent_dendrite → Ca_ER_adjacent_dendrite)
  • Compartment "ER_SM".   (type: Membrane)
    • Species "ERDensity_ER_SM"
    • Species "h_ER_SM"
    • Reaction "reaction0"   (h_ER_SM → ∅)
    • Reaction "IP3R_flux"   (Ca_spine → Ca_ER_spine)
    • Reaction "SERCA_flux"   (Ca_spine → Ca_ER_spine)
    • Reaction "ER_leak_flux"   (Ca_spine → Ca_ER_spine)
  • Compartment "MM".   (type: Membrane)
    • Species "mCaE_MM"
    • Species "hCaE_MM"
    • Species "hCaT_MM"
    • Species "mKhh_MM"
    • Species "mK23_MM"
    • Species "mKD_MM"
    • Species "zKC3_MM"
    • Species "mCaP2_MM"
    • Species "zK23_MM"
    • Species "hKA_MM"
    • Species "mCaT_MM"
    • Species "mKC3_MM"
    • Species "mKM_MM"
    • Species "hKD_MM"
    • Species "mKA_MM"
    • Reaction "CaTGate_h_maindend"   (∅ → hCaT_MM)
    • Reaction "CaEGate_h_maindend"   (∅ → hCaE_MM)
    • Reaction "KC3Gate_m_maindend"   (∅ → mKC3_MM)
    • Reaction "CaTGate_m_maindend"   (∅ → mCaT_MM)
    • Reaction "KAGate_m_maindend"   (∅ → mKA_MM)
    • Reaction "KDGate_h_maindend"   (∅ → hKD_MM)
    • Reaction "KAGate_h_maindend"   (∅ → hKA_MM)
    • Reaction "CaEGate_m_maindend"   (∅ → mCaE_MM)
    • Reaction "CaP2Gate_m_maindend"   (∅ → mCaP2_MM)
    • Reaction "KDGate_m_maindend"   (∅ → mKD_MM)
    • Reaction "K23Gate_m_maindend"   (∅ → mK23_MM)
    • Reaction "KhhGate_m_maindend"   (∅ → mKhh_MM)
    • Reaction "K23Gate_z_maindend"   (∅ → zK23_MM)
    • Reaction "KMGate_m_maindend"   (∅ → mKM_MM)
    • Reaction "KC3Gate_z_maindend"   (∅ → zKC3_MM)
    • Reaction "KD_maindend"   (K_Extracellular → K_main_dendrite)
    • Reaction "KM_maindend"   (K_Extracellular → K_main_dendrite)
    • Reaction "I_from_Soma_to_mainden"   (ion_Extracellular → ion_main_dendrite)
    • Reaction "CaP2_maindend"   (Ca_Extracellular → Ca_main_dendrite)
    • Reaction "Leak_maindend"   (ion_Extracellular → ion_main_dendrite)
    • Reaction "KC3_maindend"   (K_Extracellular → K_main_dendrite)
    • Reaction "drive_channel_MM"   (Ca_shell_Extracellular → Ca_shell_main_dendrite)
    • Reaction "CaT_maindend"   (Ca_Extracellular → Ca_main_dendrite)
    • Reaction "Khh_maindend"   (K_Extracellular → K_main_dendrite)
    • Reaction "CaE_maindend"   (Ca_Extracellular → Ca_main_dendrite)
    • Reaction "drive_pump_MM"   (Ca_shell_Extracellular → Ca_shell_main_dendrite)
    • Reaction "K23_maindend"   (K_Extracellular → K_main_dendrite)
    • Reaction "KA_maindend"   (K_Extracellular → K_main_dendrite)
    • Reaction "I_from_BranchMainDend_to_main_dendrite"   (ion_Extracellular → ion_main_dendrite)
  • Compartment "SM".   (type: Membrane)
    • Species "mKC3_SM"
    • Species "hKD_SM"
    • Species "hCaT_SM"
    • Species "zK23_SM"
    • Species "mKA_SM"
    • Species "hCaE_SM"
    • Species "mKD_SM"
    • Species "mCaP2_SM"
    • Species "mKhh_SM"
    • Species "mCaE_SM"
    • Species "mKM_SM"
    • Species "zKC3_SM"
    • Species "mCaT_SM"
    • Species "hKA_SM"
    • Species "mK23_SM"
    • Reaction "KMGate_m_spine"   (∅ → mKM_SM)
    • Reaction "KC3Gate_m_spine"   (∅ → mKC3_SM)
    • Reaction "CaTGate_h_spine"   (∅ → hCaT_SM)
    • Reaction "KDGate_m_spine"   (∅ → mKD_SM)
    • Reaction "CaP2Gate_m_spine"   (∅ → mCaP2_SM)
    • Reaction "CaEGate_h_spine"   (∅ → hCaE_SM)
    • Reaction "KDGate_h_spine"   (∅ → hKD_SM)
    • Reaction "CaTGate_m_spine"   (∅ → mCaT_SM)
    • Reaction "KAGate_m_spine"   (∅ → mKA_SM)
    • Reaction "CaEGate_m_spine"   (∅ → mCaE_SM)
    • Reaction "K23Gate_m_spine"   (∅ → mK23_SM)
    • Reaction "KC3Gate_z_spine"   (∅ → zKC3_SM)
    • Reaction "K23Gate_z_spine"   (∅ → zK23_SM)
    • Reaction "KAGate_h_spine"   (∅ → hKA_SM)
    • Reaction "KhhGate_m_spine"   (∅ → mKhh_SM)
    • Reaction "K23_spine"   (K_Extracellular → K_spine)
    • Reaction "CaE_spine"   (Ca_Extracellular → Ca_spine)
    • Reaction "Khh_spine"   (K_Extracellular → K_spine)
    • Reaction "Leak_spine"   (ion_Extracellular → ion_spine)
    • Reaction "KD_spine"   (K_Extracellular → K_spine)
    • Reaction "CaT_spine"   (Ca_Extracellular → Ca_spine)
    • Reaction "KM_spine"   (K_Extracellular → K_spine)
    • Reaction "CaP2_spine"   (Ca_Extracellular → Ca_spine)
    • Reaction "I_from_AdjDend_to_spine"   (ion_Extracellular → ion_spine)
    • Reaction "CF-induced Ca influx_spine"   (Ca_Extracellular → Ca_spine)
    • Reaction "KC3_spine"   (K_Extracellular → K_spine)
    • Reaction "KA_spine"   (K_Extracellular → K_spine)
  • Compartment "IO3smM".   (type: Membrane)
    • Species "hCaE_IO3smM"
    • Species "hKD_IO3smM"
    • Species "mK23_IO3smM"
    • Species "mKhh_IO3smM"
    • Species "mKD_IO3smM"
    • Species "mKC3_IO3smM"
    • Species "hCaT_IO3smM"
    • Species "hKA_IO3smM"
    • Species "mCaP2_IO3smM"
    • Species "zK23_IO3smM"
    • Species "mKA_IO3smM"
    • Species "mKM_IO3smM"
    • Species "mCaT_IO3smM"
    • Species "zKC3_IO3smM"
    • Species "mCaE_IO3smM"
    • Reaction "K23Gate_m_IO3smM"   (∅ → mK23_IO3smM)
    • Reaction "KDGate_m_IO3smM"   (∅ → mKD_IO3smM)
    • Reaction "KC3Gate_m_IO3smM"   (∅ → mKC3_IO3smM)
    • Reaction "K23Gate_z_IO3smM"   (∅ → zK23_IO3smM)
    • Reaction "KAGate_h_IO3smM"   (∅ → hKA_IO3smM)
    • Reaction "CaTGate_m_IO3smM"   (∅ → mCaT_IO3smM)
    • Reaction "CaEGate_h_IO3smM"   (∅ → hCaE_IO3smM)
    • Reaction "KMGate_m_IO3smM"   (∅ → mKM_IO3smM)
    • Reaction "CaP2Gate_m_IO3smM"   (∅ → mCaP2_IO3smM)
    • Reaction "CaTGate_h_IO3smM"   (∅ → hCaT_IO3smM)
    • Reaction "KAGate_m_IO3smM"   (∅ → mKA_IO3smM)
    • Reaction "CaEGate_m_IO3smM"   (∅ → mCaE_IO3smM)
    • Reaction "KDGate_h_IO3smM"   (∅ → hKD_IO3smM)
    • Reaction "KC3Gate_z_IO3smM"   (∅ → zKC3_IO3smM)
    • Reaction "KhhGate_m_IO3smM"   (∅ → mKhh_IO3smM)
    • Reaction "KA_IO3smM"   (K_Extracellular → K_IO3sm)
    • Reaction "drive_pump_IO3smM"   (Ca_shell_Extracellular → Ca_shell_IO3sm)
    • Reaction "I_from_IO3sp_to_IO3sm"   (ion_Extracellular → ion_IO3sm)
    • Reaction "CaP2_IO3smM"   (Ca_Extracellular → Ca_IO3sm)
    • Reaction "KM_IO3smM"   (K_Extracellular → K_IO3sm)
    • Reaction "drive_channel_IO3smM"   (Ca_shell_Extracellular → Ca_shell_IO3sm)
    • Reaction "Khh_IO3smM"   (K_Extracellular → K_IO3sm)
    • Reaction "Leak_IO3smM"   (ion_Extracellular → ion_IO3sm)
    • Reaction "KD_IO3smM"   (K_Extracellular → K_IO3sm)
    • Reaction "I_from_SmoothDistDendShort_to_IO3sm"   (ion_Extracellular → ion_IO3sm)
    • Reaction "CaE_IO3smM"   (Ca_Extracellular → Ca_IO3sm)
    • Reaction "K23_IO3smM"   (K_Extracellular → K_IO3sm)
    • Reaction "KC3_IO3smM"   (K_Extracellular → K_IO3sm)
    • Reaction "CaT_IO3smM"   (Ca_Extracellular → Ca_IO3sm)
  • Compartment "smDlongM".   (type: Membrane)
    • Species "zKC3_smDlongM"
    • Species "mCaP2_smDlongM"
    • Species "zK23_smDlongM"
    • Species "mKD_smDlongM"
    • Species "mKC3_smDlongM"
    • Species "mKA_smDlongM"
    • Species "mCaE_smDlongM"
    • Species "hCaT_smDlongM"
    • Species "mK23_smDlongM"
    • Species "hKA_smDlongM"
    • Species "hCaE_smDlongM"
    • Species "hKD_smDlongM"
    • Species "mCaT_smDlongM"
    • Species "mKhh_smDlongM"
    • Species "mKM_smDlongM"
    • Reaction "K23Gate_m_smoothdistdenlong"   (∅ → mK23_smDlongM)
    • Reaction "KAGate_m_smoothdistdenlong"   (∅ → mKA_smDlongM)
    • Reaction "K23Gate_z_smoothdistdenlong"   (∅ → zK23_smDlongM)
    • Reaction "KDGate_m_smoothdistdenlong"   (∅ → mKD_smDlongM)
    • Reaction "CaEGate_h_smoothdistdenlong"   (∅ → hCaE_smDlongM)
    • Reaction "KAGate_h_smoothdistdenlong"   (∅ → hKA_smDlongM)
    • Reaction "KC3Gate_m_smoothdistdenlong"   (∅ → mKC3_smDlongM)
    • Reaction "KhhGate_m_smoothdistdenlong"   (∅ → mKhh_smDlongM)
    • Reaction "CaTGate_h_smoothdistdenlong"   (∅ → hCaT_smDlongM)
    • Reaction "CaEGate_m_smoothdistdenlong"   (∅ → mCaE_smDlongM)
    • Reaction "KC3Gate_z_smoothdistdenlong"   (∅ → zKC3_smDlongM)
    • Reaction "KDGate_h_smoothdistdenlong"   (∅ → hKD_smDlongM)
    • Reaction "CaTGate_m_smoothdistdenlong"   (∅ → mCaT_smDlongM)
    • Reaction "CaP2Gate_m_smoothdistdenlong"   (∅ → mCaP2_smDlongM)
    • Reaction "KMGate_m_smoothdistdenlong"   (∅ → mKM_smDlongM)
    • Reaction "KM_smoothdistdenlong"   (K_Extracellular → K_smooth_distal_dendrite_long)
    • Reaction "CaT_smoothdistdenlong"   (Ca_Extracellular → Ca_smooth_distal_dendrite_long)
    • Reaction "Leak_smoothdistdenlong"   (ion_Extracellular → ion_smooth_distal_dendrite_long)
    • Reaction "I_from_SmoothDistDendShort_to_smooth_distal_dendrite_long"   (ion_Extracellular → ion_smooth_distal_dendrite_long)
    • Reaction "I_from_SpD_and_IO4sm_to_smooth_distal_dendrite_long"   (ion_Extracellular → ion_smooth_distal_dendrite_long)
    • Reaction "CaP2_smoothdistdenlong"   (Ca_Extracellular → Ca_smooth_distal_dendrite_long)
    • Reaction "KD_smoothdistdenlong"   (K_Extracellular → K_smooth_distal_dendrite_long)
    • Reaction "KA_smoothdistdenlong"   (K_Extracellular → K_smooth_distal_dendrite_long)
    • Reaction "Khh_smoothdistdenlong"   (K_Extracellular → K_smooth_distal_dendrite_long)
    • Reaction "K23_smoothdistdenlong"   (K_Extracellular → K_smooth_distal_dendrite_long)
    • Reaction "CaE_smoothdistdenlong"   (Ca_Extracellular → Ca_smooth_distal_dendrite_long)
    • Reaction "drive_pump_smDlongM"   (Ca_shell_Extracellular → Ca_shell_smooth_distal_dendrite_long)
    • Reaction "drive_channel_smDlongM"   (Ca_shell_Extracellular → Ca_shell_smooth_distal_dendrite_long)
    • Reaction "KC3_smoothdistdenlong"   (K_Extracellular → K_smooth_distal_dendrite_long)
  • Compartment "IO1spM".   (type: Membrane)
    • Species "hKA_IO1spM"
    • Species "mKC3_IO1spM"
    • Species "mKA_IO1spM"
    • Species "mKM_IO1spM"
    • Species "hCaE_IO1spM"
    • Species "zKC3_IO1spM"
    • Species "mK23_IO1spM"
    • Species "zK23_IO1spM"
    • Species "mCaP2_IO1spM"
    • Species "mCaE_IO1spM"
    • Species "hKD_IO1spM"
    • Species "mCaT_IO1spM"
    • Species "hCaT_IO1spM"
    • Species "mKhh_IO1spM"
    • Species "mKD_IO1spM"
    • Reaction "KC3Gate_m_IO1spM"   (∅ → mKC3_IO1spM)
    • Reaction "KDGate_m_IO1spM"   (∅ → mKD_IO1spM)
    • Reaction "KhhGate_m_IO1spM"   (∅ → mKhh_IO1spM)
    • Reaction "K23Gate_z_IO1spM"   (∅ → zK23_IO1spM)
    • Reaction "KMGate_m_IO1spM"   (∅ → mKM_IO1spM)
    • Reaction "CaTGate_m_IO1spM"   (∅ → mCaT_IO1spM)
    • Reaction "CaEGate_h_IO1spM"   (∅ → hCaE_IO1spM)
    • Reaction "KAGate_m_IO1spM"   (∅ → mKA_IO1spM)
    • Reaction "KC3Gate_z_IO1spM"   (∅ → zKC3_IO1spM)
    • Reaction "CaEGate_m_IO1spM"   (∅ → mCaE_IO1spM)
    • Reaction "CaTGate_h_IO1spM"   (∅ → hCaT_IO1spM)
    • Reaction "KAGate_h_IO1spM"   (∅ → hKA_IO1spM)
    • Reaction "CaP2Gate_m_IO1spM"   (∅ → mCaP2_IO1spM)
    • Reaction "KDGate_h_IO1spM"   (∅ → hKD_IO1spM)
    • Reaction "K23Gate_m_IO1spM"   (∅ → mK23_IO1spM)
    • Reaction "Khh_IO1spM"   (K_Extracellular → K_IO1sp)
    • Reaction "Leak_IO1spM"   (ion_Extracellular → ion_IO1sp)
    • Reaction "KC3_IO1spM"   (K_Extracellular → K_IO1sp)
    • Reaction "KM_IO1spM"   (K_Extracellular → K_IO1sp)
    • Reaction "drive_channel_IO1spM"   (Ca_shell_Extracellular → Ca_shell_IO1sp)
    • Reaction "I_from_BranchIO1sm_to_IO1sp"   (ion_Extracellular → ion_IO1sp)
    • Reaction "CaE_IO1spM"   (Ca_Extracellular → Ca_IO1sp)
    • Reaction "KA_IO1spM"   (K_Extracellular → K_IO1sp)
    • Reaction "CaT_IO1spM"   (Ca_Extracellular → Ca_IO1sp)
    • Reaction "drive_pump_IO1spM"   (Ca_shell_Extracellular → Ca_shell_IO1sp)
    • Reaction "K23_IO1spM"   (K_Extracellular → K_IO1sp)
    • Reaction "KD_IO1spM"   (K_Extracellular → K_IO1sp)
    • Reaction "CaP2_IO1spM"   (Ca_Extracellular → Ca_IO1sp)
2018-07-12T19:23:19+00:00 February 16th, 2018|biomodel|