Name: “Brown et al 2011 Purkinje 3D Spine – Spinocerebellar Ataxia study”
Saved: Sat, 12 Mar 2011 12:56:21 GMT
vcell identifier: biomodel-55178308
Owned by: “Brown”
- Compartment "spine". (type: Volume)
- Species "spinederriere"
- Species "PA_spine"
- Species "PABCa_spine"
- Species "Mg_spine"
- Species "r_spine"
- Species "CGB_spine"
- Species "CG_spine"
- Species "D28kB_spine"
- Species "D28k_spine"
- Species "K_spine"
- Species "D28k_high_spine"
- Species "PABMg_spine"
- Species "D28kB_high_spine"
- Species "Edge"
- Species "Na_spine"
- Species "Ca_spine"
- Species "ion_spine"
- Species "IP3_spine"
- Species "r_neck"
- Species "l_neck"
- Reaction "PABMg_diffusionThroughSpineNeck" (PABMg_spine → ∅)
- Reaction "D28k_high_diffusionThroughSpineNeck" (D28k_high_spine → ∅)
- Reaction "PA_Ca" (Ca_spine + PA_spine → PABCa_spine)
- Reaction "PABCa_diffusionThroughSpineNeck" (PABCa_spine → ∅)
- Reaction "D28k_diffusionThroughSpineNeck" (D28k_spine → ∅)
- Reaction "CGB_diffusionThroughSpineNeck" (CGB_spine → ∅)
- Reaction "PA_diffusionThroughSpineNeck" (PA_spine → ∅)
- Reaction "Ca_diffusionThroughSpineNeck" (Ca_spine → ∅)
- Reaction "PA_Mg" (Mg_spine + PA_spine → PABMg_spine)
- Reaction "IP3_degradation" (IP3_spine → ∅)
- Reaction "D28kB_high_diffusionThroughSpineNeck" (D28kB_high_spine → ∅)
- Reaction "CaD28k_med" (D28k_spine + Ca_spine → D28kB_spine)
- Reaction "CD28k_high" (D28k_high_spine + Ca_spine → D28kB_high_spine)
- Reaction "pulses for IP3 production" (∅ → IP3_spine)
- Reaction "IP3_diffusionThroughSpineNeck" (IP3_spine → ∅)
- Reaction "D28kB_diffusionThroughSpineNeck" (D28kB_spine → ∅)
- Reaction "CG_diffusionThroughSpineNeck" (CG_spine → ∅)
- Reaction "CGbinding" (Ca_spine + CG_spine → CGB_spine)
- Compartment "NondistributedER". (type: Volume)
- Species "Ca_NondistributedER"
- Compartment "Extracellular". (type: Volume)
- Species "K_Extracellular"
- Species "Ca_Extracellular"
- Species "Na_Extracellular"
- Species "ion_Extracellular"
- Compartment "ER_spine". (type: Volume)
- Species "Ca_ER_spine"
- Compartment "SM". (type: Membrane)
- Species "hKD_SM"
- Species "mKM_SM"
- Species "hKA_SM"
- Species "mK23_SM"
- Species "mKhh_SM"
- Species "zKC3_SM"
- Species "mCaE_SM"
- Species "hCaE_SM"
- Species "mKD_SM"
- Species "mCaT_SM"
- Species "mCaP2_SM"
- Species "hCaT_SM"
- Species "zK23_SM"
- Species "PIP2Sink_SM"
- Species "CentralPSD"
- Species "LateralPSD"
- Species "PIP2_SM"
- Species "DAG_SM"
- Species "PLC_act_SM"
- Species "PLC_SM"
- Species "Edge_SM"
- Species "mKC3_SM"
- Species "PIP2_bound_SM"
- Species "mKA_SM"
- Reaction "PLCact" (PLC_SM → PLC_act_SM)
- Reaction "CaEGate_m_spine" (∅ → mCaE_SM)
- Reaction "KDGate_m_spine" (∅ → mKD_SM)
- Reaction "CaTGate_h_spine" (∅ → hCaT_SM)
- Reaction "KMGate_m_spine" (∅ → mKM_SM)
- Reaction "K23Gate_m_spine" (∅ → mK23_SM)
- Reaction "PIP2_diffusionthroughspineneck" (PIP2_SM → ∅)
- Reaction "DAG_diffusionthroughspineneck" (DAG_SM → ∅)
- Reaction "CaP2Gate_m_spine" (∅ → mCaP2_SM)
- Reaction "KAGate_m_spine" (∅ → mKA_SM)
- Reaction "PIP2Binding" (PIP2_SM + PIP2Sink_SM → PIP2_bound_SM)
- Reaction "PIP2_hyd1" (PIP2_bound_SM → DAG_SM + IP3_spine + PIP2Sink_SM)
- Reaction "KAGate_h_spine" (∅ → hKA_SM)
- Reaction "KDGate_h_spine" (∅ → hKD_SM)
- Reaction "K23Gate_z_spine" (∅ → zK23_SM)
- Reaction "KhhGate_m_spine" (∅ → mKhh_SM)
- Reaction "PIP2_hyd" (PIP2_SM → DAG_SM + IP3_spine)
- Reaction "CaEGate_h_spine" (∅ → hCaE_SM)
- Reaction "CaTGate_m_spine" (∅ → mCaT_SM)
- Reaction "KC3Gate_z_spine" (∅ → zKC3_SM)
- Reaction "KC3Gate_m_spine" (∅ → mKC3_SM)
- Reaction "CaP2_spine" (Ca_Extracellular → Ca_spine)
- Reaction "KD_spine" (K_Extracellular → K_spine)
- Reaction "KM_spine" (K_Extracellular → K_spine)
- Reaction "CaT_spine" (Ca_Extracellular → Ca_spine)
- Reaction "K23_spine" (K_Extracellular → K_spine)
- Reaction "CaE_spine" (Ca_Extracellular → Ca_spine)
- Reaction "CF-induced Calcium Influx" (Ca_Extracellular → Ca_spine)
- Reaction "Leak_spine" (ion_Extracellular → ion_spine)
- Reaction "KA_spine" (K_Extracellular → K_spine)
- Reaction "Khh_spine" (K_Extracellular → K_spine)
- Reaction "drive_pump_spine" (Ca_Extracellular → Ca_spine)
- Reaction "drive_channel_spine" (Ca_Extracellular → Ca_spine)
- Reaction "KC3_spine" (K_Extracellular → K_spine)
- Reaction "Na-Ca Exchanger_nacaexch.mod" (Ca_Extracellular → Ca_spine)
- Compartment "ER_SM". (type: Membrane)
- Species "ERDensity_ER_SM"
- Species "DistributedER"
- Species "h_ER_SM"
- Reaction "reaction0" (h_ER_SM → ∅)
- Reaction "IP3R_flux" (Ca_spine → Ca_ER_spine)
- Reaction "ER_leak_flux" (Ca_spine → Ca_ER_spine)
- Reaction "SERCA_flux" (Ca_spine → Ca_ER_spine)
- Compartment "NondistributedERM". (type: Membrane)
- Species "h_NondistributedERM"
- Reaction "reaction1" (h_NondistributedERM → ∅)
- Reaction "JunctionalIP3R_flux" (Ca_spine → Ca_NondistributedER)
- Reaction "JunctionalSERCA_flux" (Ca_spine → Ca_NondistributedER)
- Reaction "JunctionalER_leak_flux" (Ca_spine → Ca_NondistributedER)