Name: “eungdamrong and Iyengar BiophysJ”
Saved: Mon, 21 Aug 2006 14:34:08 GMT
vcell identifier: biomodel-18894555
Owned by: “eungdamr”
- Compartment "EC". (type: Volume)
- Species "EGF_EC"
- Compartment "cyt". (type: Volume)
- Species "CAPRI_cyt"
- Species "RasGTP_pal_cyt"
- Species "Ca"
- Species "IP3"
- Species "CaCAPRI_cyt"
- Species "RasGTP_depal_cyt"
- Species "RasGDP_depal_cyt"
- Species "RasGDP_pal_cyt"
- Species "Ca_PLCe_cyt"
- Species "Sos_cyt"
- Species "Grb2_cyt"
- Species "PLCe_cyt"
- Species "buffer_cyt"
- Species "ca_buffer_cyt"
- Species "SosGrb2_cyt"
- Species "RasGRP_cyt"
- Species "CaRasGRP1_cyt"
- Reaction "Ca bind CAPRI" (Ca + CAPRI_cyt → CaCAPRI_cyt)
- Reaction "IP3 degradation" (IP3 → ∅)
- Reaction "ca bind rasGRP" (Ca + RasGRP_cyt → CaRasGRP1_cyt)
- Reaction "sos grb2 binding" (Sos_cyt + Grb2_cyt → SosGrb2_cyt)
- Reaction "RasPal basal GAP" (RasGTP_pal_cyt → RasGDP_pal_cyt)
- Reaction "basal cyt depal GEF" (RasGTP_depal_cyt → RasGDP_depal_cyt)
- Reaction "calcium buffer" (buffer_cyt + Ca → ca_buffer_cyt)
- Reaction "ca act PLCe" (Ca + PLCe_cyt → Ca_PLCe_cyt)
- Compartment "er". (type: Volume)
- Species "Ca_ER"
- Compartment "Golgi". (type: Volume)
- Compartment "PM". (type: Membrane)
- Species "PIP_PM"
- Species "PI_PM"
- Species "Shc_PM"
- Species "CaCAPRI_PM_PM"
- Species "Shc_star_PM"
- Species "EGFR_PM"
- Species "PLC_act_PM"
- Species "PLC_PM"
- Species "PIP2_PM"
- Species "Activated_EGFR_PM"
- Species "DAG_PM"
- Species "SGS_PM"
- Species "RasGTP_PM"
- Species "RasGDP_PM"
- Reaction "PIP2 synthesis" (PIP_PM → PIP2_PM)
- Reaction "Shc phosphorylation" (Shc_PM → Shc_star_PM)
- Reaction "rasGTP pal translocation" (RasGTP_pal_cyt → RasGTP_PM)
- Reaction "PLCg dephos" (PLC_act_PM → PLC_PM)
- Reaction "basal GAP" (RasGTP_PM → RasGDP_PM)
- Reaction "CAPRI translocation" (CaCAPRI_cyt → CaCAPRI_PM_PM)
- Reaction "CAPRI GAP" (RasGTP_PM → RasGDP_PM)
- Reaction "RasGDPpal translocation" (RasGDP_pal_cyt → RasGDP_PM)
- Reaction "PIP2 hydrolysis" (PIP2_PM → DAG_PM + IP3)
- Reaction "Sos activation" (SosGrb2_cyt + Shc_star_PM → SGS_PM)
- Reaction "PIP synthesis" (PI_PM → PIP_PM)
- Reaction "EGF_internalization " (Activated_EGFR_PM → ∅)
- Reaction "reaction0" (Shc_star_PM → Shc_PM)
- Reaction "EGFR_binding" (EGF_EC + EGFR_PM → Activated_EGFR_PM)
- Reaction "RasGDP depal2" (RasGDP_PM → RasGDP_depal_cyt)
- Reaction "EGF act PLCgamma" (PLC_PM → PLC_act_PM)
- Reaction "Sos act RasPM" (RasGDP_PM → RasGTP_PM)
- Reaction "Ras PM depal1" (RasGTP_PM → RasGTP_depal_cyt)
- Compartment "erMembrane". (type: Membrane)
- Species "serca"
- Species "RactCa"
- Species "Ract"
- Species "Rinh"
- Species "RinhCa"
- Species "ER_erMembrane"
- Reaction "reaction2" (Rinh + Ca → RinhCa)
- Reaction "Ca_binds_IP3R" (Ract + Ca → RactCa)
- Reaction "flux1" (Ca → Ca_ER)
- Reaction "flux0" (Ca → Ca_ER)
- Reaction "flux2" (Ca → Ca_ER)
- Compartment "GM". (type: Membrane)
- Species "RasGTP_Golgi_GM"
- Species "RasGDP_Golgi_GM"
- Species "Ca_RasGRP_GM_GM"
- Species "DAG_GM_GM"
- Species "RasGRP_DAG_GM"
- Species "Ras_CaPLCe_GM"
- Species "PIP2_GM_GM"
- Reaction "RasGTP depal translocate" (RasGTP_depal_cyt → RasGTP_Golgi_GM)
- Reaction "RasGRP_DAG GEF " (RasGDP_Golgi_GM → RasGTP_Golgi_GM)
- Reaction "reaction5" (DAG_GM_GM + RasGRP_cyt → RasGRP_DAG_GM)
- Reaction "RasGDP pal" (RasGDP_Golgi_GM → RasGDP_pal_cyt)
- Reaction "RasGDP depal translocate" (RasGDP_depal_cyt → RasGDP_Golgi_GM)
- Reaction "Ras GTP palm1" (RasGTP_Golgi_GM → RasGTP_pal_cyt)
- Reaction "caPLCe gen DAG" (PIP2_GM_GM → DAG_GM_GM + IP3)
- Reaction "CaRasGRP act RasGM" (RasGDP_Golgi_GM → RasGTP_Golgi_GM)
- Reaction "RasGM basal GAP" (RasGTP_Golgi_GM → RasGDP_Golgi_GM)
- Reaction "ras_act_PLCe" (RasGTP_Golgi_GM + Ca_PLCe_cyt → Ras_CaPLCe_GM)
- Reaction "CaRasGRP translocation" (CaRasGRP1_cyt → Ca_RasGRP_GM_GM)
- Reaction "reaction7" (DAG_GM_GM → ∅)