Name: “Scott_Fraley_Rangamani_YAP_TAZ_model_2021(2D and 3D simulations)”
Saved: Feb 31, 2021
vcell identifier: biomodel-200301029
Owned by: “prangamani”

download model (.vcml)

Compartments, Species, Reactions
  • Compartment "ECM".   (type: Volume)
  • Compartment "Cyto".   (type: Volume)
    • Species "Fakp"
    • Species "RhoAGDP"
    • Species "Fak"
    • Species "ROCKA"
    • Species "ROCK"
    • Species "mDia"
    • Species "mDiaA"
    • Species "Myo"
    • Species "MyoA"
    • Species "LIMK"
    • Species "CofilinP"
    • Species "LIMKA"
    • Species "CofilinNP"
    • Species "Fcyto"
    • Species "Gactin"
    • Species "YAPTAZP"
    • Species "YAPTAZN"
    • Reaction "r6"   (ROCKA → ROCK)
    • Reaction "r8"   (LIMK → LIMKA)
    • Reaction "r9"   (Myo → MyoA)
    • Reaction "r10"   (CofilinP → CofilinNP)
    • Reaction "r11"   (Gactin → Fcyto)
    • Reaction "r7"   (mDiaA → mDia)
    • Reaction "r13"   (YAPTAZP → YAPTAZN)
    • Reaction "r0"   (Fakp → Fak)
    • Reaction "r2"   (Fak → Fakp)
  • Compartment "Nuc".   (type: Volume)
    • Species "YAPTAZnuc"
  • Compartment "NM".   (type: Membrane)
    • Species "NPCA"
    • Species "NPC"
    • Species "LaminA"
    • Species "LaminAp"
    • Reaction "r14"   (NPC → NPCA)
    • Reaction "r15"   (LaminAp → LaminA)
    • Reaction "r16"   (YAPTAZN → YAPTAZnuc)
  • Compartment "PM".   (type: Membrane)
    • Species "RhoAGTP_MEM"
    • Species "Positionboolean"
    • Reaction "r3"   (RhoAGTP_MEM → RhoAGDP)
    • Reaction "r4"   (ROCK → ROCKA)
    • Reaction "r5"   (mDia → mDiaA)
    • Reaction "r12"   (Fak → Fakp)
    • Reaction "r1"   (RhoAGDP → RhoAGTP_MEM)
2021-08-17T15:37:56+00:00 May 7th, 2021|biomodel|