publication

Rearrangement of the endoplasmic reticulum and calcium transient formation: the computational approach
Pomorski, P., Targos, B., Baranska, J.
Biochem Biophys Res Commun. 2005;328(4):1126-32.
PUBMED:15707994      

STAT module can function as a biphasic amplitude filter
Mayya, V., Loew, L. M.
IEE Proceedings Systems Biology, March 2005, Volume 2, Issue 1, p. 43-52
PUBMED:17091582      
   VCell BioModels referenced in publication:
   user: mayya,   model name: STATmodulePaper

Adenine nucleotide regulation in pancreatic ?-cells: modeling of ATP/ADP-Ca2+ interactions
Fridlyand, Leonid E., Ma, Li, Philipson, Louis H.
Am J Physiol Endocrinol Metab. 2005;289(5):E839-48.
PUBMED:15985450      doi:10.1152/ajpendo.00595.2004
VCell MathModels referenced in publication:
user: Fridlyand,   model name: Chicago 2

Modeling and analysis of calcium signaling events leading to long-term depression in cerebellar Purkinje cells
Hernjak, N., Slepchenko, B. M., Fernald, K., Fink, C. C., Fortin, D., Moraru,, II, Watras, J., Loew, L. M.
Biophysical Journal Volume 89, Dec. 2005, pp. 3790-3806
PUBMED:16169982      
   VCell BioModels referenced in publication:
   user: hernjak,   model name: purkinje_2D
   user: hernjak,   model name: purkinje_compartmental

Phospholipase C in living cells: activation, inhibition, Ca2+ requirement, and regulation of M current
Horowitz, L. F., Hirdes, W., Suh, B. C., Hilgemann, D. W., Mackie, K., Hille, B.
J. Gen. Physiol. 2005. 126(3):243-262.
PUBMED:16129772      
   VCell BioModels referenced in publication:
   user: hillelab,   model name: Horowitz2005JGPprobes

A multi-enzyme model for Pyrosequencing
Agah, A., Aghajan, M., Mashayekhi, F., Amini, S., Davis, R. W., Plummer, J. D., Ronaghi, M., Griffin, P. B.
Nucleic Acids Research 2004 32(21):e166
PUBMED:15576673      
   VCell BioModels referenced in publication:
   user: foad,   model name: pyroseq_fin

A signal transduction pathway model prototype I: From agonist to cellular endpoint
Lukas, T. J.
Biophys. J. 2004; 87 1406-1416
PUBMED:15345523      
   VCell BioModels referenced in publication:
   user: tjlukas,   model name: Ca_Release_Coupled_MLC

A signal transduction pathway model prototype II: Application to Ca2+-calmodulin signaling and myosin light chain phosphorylation
Lukas, T. J.
Biophys. J. 2004;87 1417-1425
PUBMED:15345524      
   VCell BioModels referenced in publication:
   user: tjlukas,   model name: Ca_Release_Coupled_MLC

Bio-switches: what makes them robust?
Slepchenko, B. M., Terasaki, M.
Opin. Genet. Dev. 2004; 14/4: 428-434.
PUBMED:15261660      
   VCell BioModels referenced in publication:
   user: boris,   model name: Terasaki_MPF1

High mobility of vesicles supports continuous exocytosis at a ribbon synapse
Holt, M., Cooke, A., Neef, A., Lagnado, L.
Current Biology, Vol. 14, 173-183, February 3, 2004
PUBMED:14761649      
   VCell BioModels referenced in publication:
   user: Lagnado Lab,   model name: TIR_FRAP