publication

Quantifying a pathway: kinetic analysis of actin dendritic nucleation
Kraikivski, P., Slepchenko, B. M.
Biophys J. 2010;99(3):708-15.
PUBMED:20682247
doi:10.1016/j.bpj.2010.05.007

Cingulin and paracingulin show similar dynamic behaviour, but are recruited independently to junctions
Paschoud, S., Yu, D., Pulimeno, P., Jond, L., Turner, J. R., Citi, S.
Mol Membr Biol. 2010 Dec 17.
PUBMED:21166484      doi:10.3109/09687688.2010.538937
   VCell BioModels referenced in publication:
   user: dyu,   model name: final cingulin model

Quantitative Measurement of Ca2+ in the Sarcoplasmic Reticulum Lumen of Mammalian Skeletal Muscle
Ziman, Andrew P., Ward, Christopher W., Rodney, George G., Lederer, W. Jonathan, Bloch, Robert J.
Biophys J, 2010. 99(8): p. 2705-2714.
PUBMED:20959112      doi:10.1016/j.bpj.2010.08.032
   VCell BioModels referenced in publication:
   user: dyu,   model name: final cingulin model

Design of versatile biochemical switches that respond to amplitude, duration, and spatial cues
Lipshtat, Azi, Jayaraman, Gomathi, He, John Cijiang, Iyengar, Ravi
Proceedings of the National Academy of Sciences. 107:1247-1252, 2010.
PUBMED:20080566      doi:10.1073/pnas.0908647107
   VCell BioModels referenced in publication:
   user: azilipshtat,   model name: PNAS_switch
   user: azilipshtat,   model name: Rap1_switch

Phosphodiesterase 1C is dispensable for rapid response termination of olfactory sensory neurons
Cygnar, K. D., Zhao, H.
Nat Neurosci. 12:454-62, 2009. PMID 19305400 2712288.
PUBMED:19305400      doi:10.1038/nn.2289
VCell BioModels referenced in publication:
user: cygnar,   model name: NatureNeuroscience2009

A Tridimensional Model of Proangiogenic Calcium Signals in Endothelial Cells
Munaron, L.
The Open Biology Journal, 2009, 2, 114-129 Publication Date: October 2009
doi:10.2174/1874196700902010114
   VCell BioModels referenced in publication:
   user: Annalisa03,   model name: lmunaron

Robustness and coherence of a three-protein circadian oscillator: landscape and flux perspectives
Wang, J., Xu, L., Wang, E.
Biophys J. 2009;97(11):3038-46.
PUBMED:19948134      doi:10.1016/j.bpj.2009.09.021

A genetically encoded reporter of synaptic activity in vivo
Dreosti, Elena, Odermatt, Benjamin, Dorostkar, Mario M., Lagnado, Leon
Nat Methods. 2009 Dec;6(12):883-9. Epub 2009 Nov 8.
PUBMED:19898484      doi:10.1038/nmeth.1399
VCell BioModels referenced in publication:
user: Leon,   model name: Fig.1v7
user: Leon,   model name: GECI_Synapse

Subcellular Dynamics of Type II PKA in Neurons
Zhong, Haining, Sia, Gek-Ming, Sato, Takashi R., Gray, Noah W., Mao, Tianyi, Khuchua, Zaza, Huganir, Richard L., Svoboda, Karel
Neuron. 62:363-374, 2009
PUBMED:19447092      doi:10.1016/j.neuron.2009.03.013
   VCell BioModels referenced in publication:
   user: globus,   model name: RIIb 2D with AKAP
   user: globus,   model name: PKA 2D
   user: globus,   model name: CAT diffusion

A model of action potentials and fast Ca2+ dynamics in pancreatic beta-cells
Fridlyand, L. E., Jacobson, D. A., Kuznetsov, A., Philipson, L. H.
Biophys J. 2009;96(8):3126-39.
PUBMED:19383458      doi:10.1016/j.bpj.2009.01.029
VCell MathModels referenced in publication:
user: Fridlyand,   model name: MouseSpike