New method for particle-based simulations with excluded volume.

2016-11-07T20:24:43+00:00 June 8th, 2016|News, VCell Posts|

2016-02-02  SpringSaLad (Springs, Sites, and Langevin Dynamics) is a new software that uses a course-grained approach to model biomolecules as a group of linked spherical sites with excluded volumes.  The software user material is available here.  Read about the method and software in  Springsalad: A spatial, particle-based biochemical simulation platform with excluded volume. Michalski, P.J., and L.M. Loew. 2016 Biophys J. 110:523-529. PMID 26840718.

New VCell model of PAR2 desensitization

2017-08-25T17:51:29+00:00 March 15th, 2016|News, VCell Posts|

2016-03-15. A new VCell model  of the mechanisms and kinetics of desensitization of the protease-activated receptor-2 (PAR2), a Gq-PCR, was published by Jung et al. in the Journal of General Physiology.  Visit the Published Models listing to view the model details and link to the publication.

2016-12-06T21:27:29+00:00 February 2nd, 2016|News, NRCAM publication|

2016-02-02 Paul Michalski and Les Loew describe their new Spring SaLaD sofware for spatial, stochastic, particle-based modeling of biochemical systems at the mesoscale. See the publication Michalski and Loew, 2016. SpringSaLaD: A Spatial, Particle-Based Biochemical Simulation Platform with Excluded Volume. Biophysical Journal 110:523-529. PMID 26840718