publication

An open model of actin dendritic nucleation
Ditlev, J. A., Vacanti, N. M., Novak, I. L., Loew, L. M.
Biophys J. 2009 96:3529-3542.
PUBMED:19413959      doi:10.1016/j.bpj.2009.01.037
VCell BioModels referenced in publication:
user: les,   model name: Actin Dendritic Nucleation
user: les,   model name: Actin Dendritic Nucleation_Detailed Branching
VCell MathModels referenced in publication:
user: les, model name: Actin Advection and Diffusion
user: les, model name: Actin Advection and Diffusion 2D Cylindrical Transform

Diffusion in Cytoplasm: Effects of Excluded Volume Due to Internal Membranes and Cytoskeletal Structures
Novak, Igor L., Kraikivski, Pavel, Slepchenko, Boris M.
Biophys J. 2009;97(3):758-67.
PUBMED:19651034      doi:10.1016/j.bpj.2009.05.036

Calcium transport mechanisms of PC12 cells
Duman, J. G., Chen, L., Hille, B.
J. Gen. Physiol. 131:307-323, 2008.
PUBMED:18347082      doi:10.1085/jgp.200709915
VCell BioModels referenced in publication:
user: hillelab,   model name: DumanJGP2008Fig9undiff
user: hillelab,   model name: DumanJGP2008Fig9diff
user: hillelab,   model name: DumanJGP2008Fig1A-control
user: hillelab,   model name: DumanJGP2008Fig1A-4block

Cell shape and negative links in regulatory motifs together control spatial information flow in signaling networks
Neves, S. R., Tsokas, P., Sarkar, A., Grace, E. A., Rangamani, P., Taubenfeld, S. M., Alberini, C. M., Schaff, J. C., Blitzer, R. D., Moraru,, II, Iyengar, R.
Cell. 2008 May 16;133(4):666-80.
PUBMED:18485874      
   VCell BioModels referenced in publication:
   user: susana,   model name: neves_cell_2008

Dynamics of Cdc42 network embodies a Turing-type mechanism of yeast cell polarity
Goryachev, A. B., Pokhilko, A. V.
FEBS Letters, v. 582, p.1437, (2008)
PUBMED:18381072      doi:10.1016/j.febslet.2008.03.029
VCell BioModels referenced in publication:
user: alex1,   model name: full01

Pathway of actin filament branch formation by Arp2/3 complex
Beltzner, C. C., Pollard, T. D.
J Biol Chem. 2008;283(11):7135-44.
PUBMED:18165685      doi:10.1074/jbc.M705894200

Potential landscape and flux framework of nonequilibrium networks: robustness, dissipation, and coherence of biochemical oscillations
Wang, J., Xu, L., Wang, E.
Proc Natl Acad Sci USA. 2008;105(34):12271-6.
PUBMED:18719111      doi:10.1073/pnas.0800579105

Quantitative analysis of G-actin transport in motile cells
Novak, I. L., Slepchenko, B. M., Mogilner, A.
Biophys J. 2008;95(4):1627-38.
PUBMED:18502800      

Robustness, dissipations and coherence of the oscillation of circadian clock: potential landscape and flux perspectives
Wang, J., Xu, L., Wang, E.
PMC Biophys. 2008;1(1):7.
PUBMED:19351381      doi:10.1186/1757-5036-1-7

A spatially restricted increase in receptor mobility is involved in directional sensing during Dictyostelium discoideum chemotaxis
de Keijzer, S., Serge, A., van Hemert, F., Lommerse, P. H. M., Lamers, G. E. M., Spaink, H. P., Schmidt, T., Snaar-Jagalska, B. E.
J Cell Sci. 2008;121(Pt 10):1750-7.
PUBMED:18469015      doi:10.1242/jcs.030692