publication

Interconnected network motifs control podocyte morphology and kidney function
Azeloglu, E. U., Hardy, S. V., Eungdamrong, N. J., Chen, Y., Jayaraman, G., Chuang, P. Y., Fang, W., Xiong, H., Neves, S. R., Jain, M. R., Li, H., Ma&apos, ayan, A., Gordon, R. E., He, J. C., Iyengar, R.
Sci. Signal., 4 February 2014 Vol. 7, Issue 311, p. ra12 [DOI: 10.1126/scisignal.2004621]
PUBMED:24497609      doi:10.1126/scisignal.2004621
   VCell BioModels referenced in publication:
   user: sihar,   model name: Podocyte Nested FFM model (copy sensitivity)
   user: […]

Structural basis of thymosin-beta4/profilin exchange leading to actin filament polymerization
Xue, B., Leyrat, C., Grimes, J. M., Robinson, R. C.
Proc Natl Acad Sci USA. 2014;111(43):E4596-605.
PUBMED:25313062      doi:10.1073/pnas.1412271111

Synaptic excitation is regulated by the postsynaptic dSK channel at the Drosophila larval NMJ
Gertner, D. M., Desai, S., Lnenicka, G. A.
Journal of NeurophysiologyPublished 15 June 2014Vol. 111no. 2533-2543 DOI: 10.1152/jn.00903.2013
PUBMED:24671529      doi:10.1152/jn.00903.2013
   VCell BioModels referenced in publication:
   user: gregl,   model name: epsp_gcs

Using Markov state models to develop a mechanistic understanding of protein kinase A regulatory subunit RIalpha activation in response to cAMP binding
Boras, B. W., Kornev, A., Taylor, S. S., McCulloch, A. D.
J Biol Chem. 2014 Sep 8. pii: jbc.M114.568907
PUBMED:25202018      doi:10.1074/jbc.M114.568907
   VCell BioModels referenced in publication:
   user: bboras,   model name: Boras_PKA-Dimer
   user: bboras,   model name: Boras_PKA-CBD-A
   user: bboras,   model name: Boras_PKA-Unconstrained
   user: bboras,   model name: Boras_PKA_Dimer_mutant_B-inhibited
   user: bboras,   model name: Boras_PKA_CBD-A_mutant_B-inhibited
   user: bboras,   model name: Boras_PKA-CBD-A
   user: […]

Computational Analysis of Rho GTPase Cycling
Cibele V Falkenberg, Leslie M Loew
PLoS Comput Biol. 2013 9(1): e1002831. doi:10.1371/journal.pcbi.1002831 PLoS Comput Biol 9(1): e1002831. doi:10.1371/journal.pcbi.1002831
PUBMED:23326220      doi:10.1371/journal.pcbi.1002831
   VCell BioModels referenced in publication:
   user: falkenbe,   model name: Falkenberg_GTPases_Rac_betaCell

Recycling of kinesin-1 motors by diffusion after transport
Blasius, T. L., Reed, N., Slepchenko, B. M., Verhey, K. J.
PLoS ONE. 2013;8(9):e76081.
PUBMED:24098765      doi:10.1371/journal.pone.0076081

Decoding information in cell shape
Rangamani, P., Lipshtat, A., Azeloglu, E. U., Calizo, R. C., Hu, M., Ghassemi, S., Hone, J., Scarlata, S., Neves, S. R., Iyengar, R.
Cell, 2013, 154:1356-1369.
PUBMED:24034255      doi:10.1016/j.cell.2013.08.026
   VCell BioModels referenced in publication:
   user: prangamani,   model name: EGF ras Sep 2012
   user: prangamani,   model name: PDGF Src March 2012
   user: prangamani,   model name: Rangamani Cell 2013 B2R signaling

Tension modulates actin filament polymerization mediated by formin and profilin
Courtemanche, N., Lee, J. Y., Pollard, T. D., Greene, E. C.
Proc Natl Acad Sci USA. 2013;110(24):9752-7.
PUBMED:23716666      doi:10.1073/pnas.1308257110

Differential triggering of spontaneous glutamate release by P/Q-, N- and R-type Ca2+ channels
Ermolyuk, Y. S., Alder, F. G., Surges, R., Pavlov, I. Y., Timofeeva, Y., Kullmann, D. M., Volynski, K. E.
Nat Neurosci. 2013;16(12):1754-63.
PUBMED:24185424      doi:10.1038/nn.3563

There is more than one way to model an elephant. Experiment-driven modeling of the actin cytoskeleton
Ditlev, J. A., Mayer, B. J., Loew, L. M.
Biophys J. 2013;104(3):520-32.
PUBMED:23442903      doi:10.1016/j.bpj.2012.12.044