VCell model of transport in plants
2020-01-30. A VCell model is used in a new paper by Dreyer and Michard to re-examine the concept of high- and low-affinity nutrient uptade systems in plants. Visit our published models page for links to the paper.
Dreyer & Michard, 2020
High- and Low-Affinity Transport in Plants From a Thermodynamic Point of View.
Dreyer, I., and E. Michard
Front. Plant Sci. 10: 17497.
PUBMED:32082350
doi:10.3389/fpls.2019.01797
VCell 7.2 Released
2019-12-10. VCell 7.2 has been released. See the Release Notes for a full list of the many new features in VCell 7.2 including new functionality to store identifiers and text annotations for model components, a service linking VCell simulation with ImageJ image analysis functions, rate rules and assignment rules in ODE applications, improved SBML import along with several other improvements.
Stone et al., 2019
Notch Pathway: A two-dimensional finite element model of cyclic adenosine monophosphate (cAMP) intracellular signaling
Stone, N., S. Shettlesworth, T.C. Rich, S.J. Leavesley, and A.-V. Phan
SN Appl. Sci. 2019 1:1713
DOI:10.1007/s42452-019-1757-9
VCell model of cAMP signaling
2019-11-28. VCell was used to create a 2D spatial model of cAMP intracellular signaling in a new publication by Stone and colleagues. Visit our published models page for links to the paper.
Vujovic et al., 2020
Notch Pathway: A Bistable Inducer of Biological Noise?
Vujovic, F.; Hunter, N.; Farahani, R. M.
Cell Communication and Signaling 2019, 17 (1), 133.
PUBMED:31640734
DOI:10.1186/s12964-019-0453-0
biomodel-168717401
Name: “Exosome_Processing_Bodies_Continuous”
Saved: Oct 21, 2019
vcell identifier: biomodel-168717401
Owned by: “seriously”
20th Annual VCell Short Course
2019-6-18 CCAM hosted a Computational Cell Biology Workshop on June 24-26, 2019, a combined workshop for both VCell and COPASI modeling software. Ten scientists from the US, Netherlands and Germany traveled to work with the VCell and COPASI teams to construct models based on their own research interests. It was exciting to see VCell and COPASI models applied to such interesting cell biology projects. Thanks to all for a very successful course!
Getz et al., 2019
A predictive computational model reveals that giv/girdin serves as a tunable valve for egfr-stimulated cyclic amp signals.
Getz, M., L. Swanson, D. Sahoo, P. Ghosh, and P. Rangamani
Mol Biol Cell. 2019 30: 1621-1633.
PUBMED:31017840
doi:10.1091/mbc.E18-10-0630
VCell BioModels referenced in publication:
user: mgetz, model name: A predictive computational model reveals that GIV/Girdin serves as a tunable valve for EGFR-stimulated Cyclic AMP Signals
biomodel-156134818
Name: “A predictive computational model reveals that GIV/Girdin serves as a tunable valve for EGFR-stimulated Cyclic AMP Signals”
Saved: Apr 30, 2019
vcell identifier: biomodel-156134818
Owned by: “mgetz”