publication

Platelet surface-associated activation and secretion-mediated inhibition of coagulation factor XII
Zakharova, N. V., Artemenko, E. O., Podoplelova, N. A., Sveshnikova, A. N., Demina, I. A., Ataullakhanov, F. I., Panteleev, M. A.
Journal: PLoS ONE 10(2): e0116665. doi:10.1371/journal.pone.0116665 Publication Date: February 17, 2015
PUBMED:25688860      doi:10.1371/journal.pone.0116665
   VCell BioModels referenced in publication:
   user: agolomy,   model name: fXii_activation

Analysis of AKAP7gamma Dimerization
Singh, A., Rigatti, M., Le, A. V., Carlson, C. R., Moraru,, II, Dodge-Kafka, K. L.
J Signal Transduct. 2015;2015:371626.
PUBMED:26417456      doi:10.1155/2015/371626

Spindle assembly checkpoint is sufficient for complete Cdc20 sequestering in mitotic control
Ibrahim, B.
Comput Struct Biotechnol J. 2015;13:320-8.
PUBMED:25977749      doi:10.1016/j.csbj.2015.03.006

Bridging scales through multiscale modeling: a case study on protein kinase A
Boras, B. W., Hirakis, S. P., Votapka, L. W., Malmstrom, R. D., Amaro, R. E., McCulloch, A. D.
Front Physiol. 2015;6:250.
PUBMED:26441670      doi:10.3389/fphys.2015.00250

Symmetry and scale orient Min protein patterns in shaped bacterial sculptures
Wu, F., van Schie, B. G., Keymer, J. E., Dekker, C.
Nat Nanotechnol. 2015;10(8):719-26.
PUBMED:26098227      doi:10.1038/nnano.2015.126

Using Markov state models to develop a mechanistic understanding of protein kinase A regulatory subunit RIalpha activation in response to cAMP binding
Boras, B. W., Kornev, A., Taylor, S. S., McCulloch, A. D.
J Biol Chem. 2014 Sep 8. pii: jbc.M114.568907
PUBMED:25202018      doi:10.1074/jbc.M114.568907
   VCell BioModels referenced in publication:
   user: bboras,   model name: Boras_PKA-Dimer
   user: bboras,   model name: Boras_PKA-CBD-A
   user: bboras,   model name: Boras_PKA-Unconstrained
   user: bboras,   model name: Boras_PKA_Dimer_mutant_B-inhibited
   user: bboras,   model name: Boras_PKA_CBD-A_mutant_B-inhibited
   user: bboras,   model name: Boras_PKA-CBD-A
   user: […]

A synaptic mechanism for temporal filtering of visual signals
Baden, T., Nikolaev, A., Esposti, F., Dreosti, E., Odermatt, B., Lagnado, L.
PLoS Biol. 2014;12(10):e1001972.
PUBMED:25333637      doi:10.1371/journal.pbio.1001972

Active transport can greatly enhance Cdc20:Mad2 formation
Ibrahim, B., Henze, R.
Int J Mol Sci. 2014;15(10):19074-91.
PUBMED:25338047      doi:10.3390/ijms151019074

Dynamic metabolic control of an ion channel
Hille, B., Dickson, E., Kruse, M., Falkenburger, B.
Prog Mol Biol Transl Sci. 2014;123:219-47.
PUBMED:24560147      doi:10.1016/b978-0-12-397897-4.00008-5

Integrating fluorescent biosensor data using computational models
Greenwald, E. C., Polanowska-Grabowska, R. K., Saucerman, J. J.
Methods Mol Biol. 2014;1071:227-48.
PUBMED:24052393      doi:10.1007/978-1-62703-622-1_18