biomodel-200965116
Name: “Dicer_Check_Michaelis_new”
Saved: Feb 23, 2021
vcell identifier: biomodel-200965116
Owned by: “seriously”
biomodel-200999311
Name: “Dicer_Check_MassAction”
Saved: Feb 23, 2021
vcell identifier: biomodel-200999311
Owned by: “seriously”
Johnson et al., 2021
Quantifying the Roles of Space and Stochasticity in Computer Simulations for Cell Biology and Cellular Biochemistry.
Johnson, M. E.; Chen, A.; Faeder, J. R.; Henning, P.; Moraru, I. I.; Meier-Schellersheim, M.; Murphy, R. F.; Prüstel, T.; Theriot, J. A.; Uhrmacher, A. M.
Mol Biol Cell 2021, 32 (2), 186–210.
PUBMED:33237849
doi:10.1091/mbc.E20-08-0530
Myeong et al., 2020
Phosphatidylinositol 4,5-bisphosphate is regenerated by speeding of the PI 4-kinase pathway during long PLC activation.
Myeong, J.; de la Cruz, L.; Jung, R.; Yeon, J.-H.; Suh, B.-C.; Koh, D.-S.; Hille, B.
J Gen Physiol. 2020. 152 (12): e202012627.
PUBMED:33186442
doi:10.1085/jgp.202012627
VCell BioModels referenced in publication:
user: Myeong, model name: PI cycle Figure 4 & S4
user: Myeong, model name: PI cycle Figure 6, 7 & S9
biomodel-189512756
Name: “PI cycle Figure 6,7 & S9”
Saved: Sep 18, 2020
vcell identifier: biomodel-189512756
Owned by: “Myeong”
biomodel-189513183
Name: “PI cycle Figure 4 & S4”
Saved: Sep 18, 2020
vcell identifier: biomodel-189513183
Owned by: “Myeong”
VCell 7.3 released
2020-11-30. Announcing the release of VCell 7.3! VCell 7.3 adds capabilities for multiple trajectories for non-spatial stochastic simulationss, interchange with the Open Modeling EXchange format (.omex), and automatic assignment of catalysts in the reaction diagram as well as numerous additional improvements and bug fixes.
biomodel-185577495
Name: “Minimum Stochastic Model BetaCell”
Saved: Nov 17, 2020
vcell identifier: biomodel-185577495
Owned by: “mgetz”
VCell model of Ca-cAMP-PKA
2020-11-17. A VCell model was used to explore Ca2+-cAMP-PKA signalling circuits in a new publication from the Rangamani and Zhang laboratories. Find links to the model and citation on our published models page.
Tenner et al., 2020
Spatially Compartmentalized Phase Regulation of a Ca2+-CAMP-PKA Oscillatory Circuit.
Tenner, B.; Getz, M.; Ross, B.; Ohadi, D.; Bohrer, C. H.; Greenwald, E.; Mehta, S.; Xiao, J.; Rangamani, P.; Zhang, J.
Elife 2020, 9.
PUBMED:33201801
doi:10.7554/eLife.55013
VCell BioModels referenced in publication:
user: mgetz, model name: Minimum Stochastic Model BetaCell